Aminipila butyrica: Ami103574_13320
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Entry
Ami103574_13320 CDS
T06474
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
abut
Aminipila butyrica
Pathway
abut03030
DNA replication
abut03410
Base excision repair
abut03420
Nucleotide excision repair
abut03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
abut00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Ami103574_13320 (ligA)
03410 Base excision repair
Ami103574_13320 (ligA)
03420 Nucleotide excision repair
Ami103574_13320 (ligA)
03430 Mismatch repair
Ami103574_13320 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
abut03032
]
Ami103574_13320 (ligA)
03400 DNA repair and recombination proteins [BR:
abut03400
]
Ami103574_13320 (ligA)
Enzymes [BR:
abut01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Ami103574_13320 (ligA)
DNA replication proteins [BR:
abut03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Ami103574_13320 (ligA)
DNA repair and recombination proteins [BR:
abut03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Ami103574_13320 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Ami103574_13320 (ligA)
MMR (mismatch excision repair)
DNA ligase
Ami103574_13320 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Ami103574_13320 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
PTCB-BRCT
BRCT_2
HHH_5
DNA_ligase_ZBD
HHH
Nlig-Ia
Lar_restr_allev
AphA_like
Motif
Other DBs
NCBI-ProteinID:
QIB70210
UniProt:
A0A858BZ66
LinkDB
All DBs
Position
complement(2803516..2805582)
Genome browser
AA seq
688 aa
AA seq
DB search
MNQPEHQETNRLTHQEVQKLQEMKERIDLLNQAAKAYYQESREIMPNIEYDRLYDELAAL
EAETGVVLSSSPTVKVGYEVLSDLPKEAHEFRMLSLDKTKEVDTLSAFLGDKAGVLSWKL
DGLTIVLTYEGGRLAKAVTRGNGEIGEVITNNARVFANLPLEIPFKGKLVLRGEAVITYS
EFEKINSQISEVQAKYKNPRNLCSGSVRQLNNQITKERNVQFFAFALVQASGAGTAAAAG
KVLRTNSRNDQLDWLADQGFQVVAHRMTDGKTISEDVEWFASQMETNDFPSDGLVLLIDD
IQYGESLGNTSKFPRDSLAFKWRDERKETILQEIEWSASRTGLINPVAIFEPVELEGTTV
SRASVHNISILRQLELGIGDAIEVYKANMIIPQIAENLTRSGLVAIPEVCPVCGGHTAIK
SENQVEVLVCTNDSCLAKQIKSFTHFVSRDAMNMEGLSEATIEKLIGKGLITELADLFHI
EHFKTEITEMEGFGEKSFAKLIASVKKASHTTTVRLLYSLGIPNIGLANAKTICKNADYD
WQRIQNLLPEELVEIDGVGPIMAEAYARFFADEKNQQIIEDVLKEITFEEVPVSEAGEQI
FTDMVFVITGSLEHFENREALKALIESKGGKVTSSVTSKTTSLINNDALSNSSKNKKAKE
LGIEIITEEDFMKRYEINISFKDGTPIE
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atgaatcagcctgagcatcaggagacaaacagattgacgcaccaggaggtgcaaaaacta
caagagatgaaagagcggattgatctgctgaatcaggcggctaaggcctattaccaggag
agccgggagattatgcctaacatcgaatacgaccggctttacgatgagctggcggccttg
gaggcggagactggggtagtcctgtcctccagccctacggtcaaggttggttatgaggtg
ttgagcgatctgcccaaagaagcccacgagttcagaatgctttccttggataagaccaag
gaagtagacaccttaagcgcttttttaggtgacaaggccggtgtgttgtcctggaagctg
gatggcctgaccatcgtccttacctatgaagggggccgtctggcgaaggcagttacccgg
ggaaacggggagattggcgaagtcatcaccaacaacgccagagtctttgctaacctgccg
ctggagataccttttaagggcaaactggtacttcgaggagaggcagtcattacctattcg
gaatttgaaaagattaacagccaaatcagcgaggttcaagcgaagtataagaatccccgg
aatttgtgcagcggcagcgttcgtcagttaaacaatcaaatcactaaggaacggaatgtg
cagttttttgcttttgcactggtacaggccagtggagcaggcacggctgcggcggcgggg
aaggttttgcggactaactcgagaaatgatcagctggattggctggcggatcaagggttc
caggtggtagcacatcggatgacagatgggaaaactatttctgaggatgtagaatggttt
gcttctcagatggaaaccaacgatttcccctcggatgggctggtattgcttatagacgat
attcaatatggcgaaagcctgggaaatacctcaaagtttccaagagattccttagccttc
aaatggcgggatgagcggaaggaaacgatattgcaggaaatcgagtggagtgcctcccgg
acagggttgattaatccggtagccatctttgaaccagtggaactagagggaaccacggtc
agccgagccagtgtgcacaacatcagtattttgaggcaattggagctgggcatcggcgat
gccatcgaggtttacaaggccaatatgattatccctcagattgcagaaaatctcacccgc
agcgggctggtagctattccggaggtctgtccggtttgcggaggtcacacggcgattaaa
agcgaaaaccaggtggaggtgctggtgtgtaccaacgattcctgcttggctaaacagatt
aaatcctttactcactttgtcagccgggatgccatgaacatggaaggtctgtccgaggct
accatcgaaaagctcattggcaaggggctgattacggagttggccgatttgttccatata
gagcacttcaagacggaaattaccgagatggagggttttggtgaaaagtcctttgctaag
ctgattgcttctgtaaaaaaggcgagccatactactactgttcggctgttgtatagcctg
gggattcccaatattggtctggccaatgctaaaaccatctgtaaaaatgcagactatgac
tggcagcggattcagaacctgctgccggaagaactggtggaaatcgatggagtagggcct
attatggccgaggcttacgcccgcttctttgctgatgagaaaaatcagcagattatagag
gatgtattgaaagagattacttttgaagaggttccagtcagtgaggctggagagcagatc
ttcacggacatggttttcgtcatcaccggatctctggagcactttgaaaaccgggaggcc
ttgaaggcactgattgaaagtaaggggggcaaagtgaccagctcggtgacgtcaaagacg
acttctttgattaacaacgatgccctgtccaattcttctaaaaataaaaaggccaaggaa
ttaggtatagaaatcatcaccgaagaagattttatgaaaaggtatgaaataaatataagt
tttaaagacggcacacctatagaataa
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