Acidobacterium capsulatum: ACP_1809
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Entry
ACP_1809 CDS
T00868
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aca
Acidobacterium capsulatum
Pathway
aca03030
DNA replication
aca03410
Base excision repair
aca03420
Nucleotide excision repair
aca03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ACP_1809 (ligA)
03410 Base excision repair
ACP_1809 (ligA)
03420 Nucleotide excision repair
ACP_1809 (ligA)
03430 Mismatch repair
ACP_1809 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aca03032
]
ACP_1809 (ligA)
03400 DNA repair and recombination proteins [BR:
aca03400
]
ACP_1809 (ligA)
Enzymes [BR:
aca01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ACP_1809 (ligA)
DNA replication proteins [BR:
aca03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ACP_1809 (ligA)
DNA repair and recombination proteins [BR:
aca03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ACP_1809 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ACP_1809 (ligA)
MMR (mismatch excision repair)
DNA ligase
ACP_1809 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ACP_1809 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
5_3_exonuc
RNA_pol_A_CTD
BRCT_2
RNA_ligase
PGM1_C
Motif
Other DBs
NCBI-ProteinID:
ACO32726
UniProt:
C1F7S7
LinkDB
All DBs
Position
complement(2143021..2145054)
Genome browser
AA seq
677 aa
AA seq
DB search
MSHASAAQQIESLRESIRHHEYLYYVQDQPEIDDLAFDELMRKLQRLEAEHPELITPDSP
TQRVGGKPKEGFAKVAHSRPMLSLDNVNSEEELRDWERRVREQAGQNAEIEYVCEYKLDG
LSMALHYRDGQLARGLTRGDGEIGEDVTTNVRTIRSVPLSIADGKLQQAKMPANFEVRGE
VVMPFTAFEKLNEEREAQGLAPAANPRNAAAGTIRTLEPNIVAQRRLDFYAYFALTEKGE
DAFGEQEEALDALATLGFRVNQHRHAAKSIETVVEFVNRAEEHRSRLGYEIDGVVVKVNS
AVLQRRLGYTGRAPRWAVAYKFAARSGVTQVEDIQVQVGRTGKLTPVAWLAPVQVGGTTV
TRATLHNADEIERLGLRIGDFVRIERGGDVIPKVVEVVDDAEHPRGTKHFHFPHACPACG
SEVVRTPGEADYRCVNTDCPARLRESLLHFASRGVMNIEGMGEAIVMQLLGRGLVKTVSD
IYSLTEEQLVSLERMGKKSATALLGEIDKSRQAPLDRVLFGLGIRFVGERTAQALAEEYG
SMDALMQASREELERVNDVGPRVSEAIREFFDEPRNRDLVERLREAGLRFTGEKRKKTSQ
LAGLTFVLTGTLPGLSRDEAKGKIENAGGHVSGSVSKKTNYVVAGADAGSKLEKANSLGV
PVIDEAALIKMLETEQA
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgagccacgcctctgccgcgcaacagattgagtcgctgcgcgaaagcattcgccatcac
gagtacctctactacgtgcaggatcagccggagatcgacgatctcgctttcgacgagctg
atgcgcaagctgcagcgccttgaggcggagcaccctgagctgatcacgcccgactcgccc
acgcagcgcgtcggcggcaagcccaaagagggctttgccaaggtggcgcactcgcgcccg
atgctctcgctcgacaatgtcaacagcgaagaggaactgcgcgactgggagcgccgcgtg
cgcgagcaggccgggcagaatgcggagatcgagtacgtctgcgaatacaagctcgacggc
ctctcgatggcgctgcactaccgcgacggacaactggcgcgcgggctcacgcgcggcgac
ggagaaatcggcgaagacgtcacgaccaacgtgcgcaccattcgctcagtgccgctttcg
attgcagacggcaagttgcagcaggccaaaatgcccgcaaactttgaggtgcgcggcgaa
gtggtcatgccctttacggcctttgaaaagctgaacgaagagcgcgaggcgcaggggctt
gcgccggccgcgaatccgcgcaatgcggcggccggcaccattcgcacgcttgagccgaat
atcgtcgcgcaacggcggctcgacttctacgcctactttgcgctcactgagaaaggcgaa
gacgccttcggtgagcaggaagaggcgctcgacgcgctggccacactgggctttcgcgtc
aaccagcaccgccacgcggccaaaagcattgagacggtggtcgagtttgtgaatcgcgcc
gaggagcatcgcagccgcctcggctatgagattgatggcgtggtggtcaaggtgaactcc
gcggtgctgcagcggcggctgggctatacgggccgcgcgcctcgctgggccgtggcctac
aagtttgccgctcgctccggggtcacgcaggttgaggacattcaagtgcaggtgggccgc
accggcaagctcacgcccgtggcctggctggctcccgtgcaggtgggcggcaccaccgtc
acgcgcgccacgctgcacaacgccgatgaaattgagcggctggggctccgcatcggcgat
tttgtgcgcatcgagcgcggtggcgacgtgattcctaaagtcgtcgaagtcgtcgatgac
gccgaacatccgcgcggcacaaagcactttcactttccgcacgcctgcccggcctgcggc
agtgaagtggtgcgcacgcccggcgaggcggactaccgctgcgtcaacaccgattgcccg
gcgcgtctgcgcgagagcctgctgcactttgcctcgcgcggcgtcatgaacattgagggc
atgggcgaggccattgtgatgcagttgctggggcgcggcctggtcaagacggtttcagac
atctactcgctcacagaggagcagcttgtcagcctcgagcgcatgggcaaaaagtccgcc
accgcgctgctgggtgagattgacaagtcgcgtcaggctccgctcgaccgtgtgctcttt
ggcctcggcattcgctttgtgggcgagcgcacggcacaggcactggccgaggagtacggc
tccatggatgcgctcatgcaggcttcgcgcgaagagctggagcgcgtgaatgacgtgggc
ccgcgcgtctccgaggccattcgcgagttctttgatgagccgcgcaaccgcgatctggtg
gagcggctgcgcgaggcgggcctgcgcttcaccggcgaaaagcgcaaaaagaccagccag
ctcgcagggctgacctttgtgctcaccggcacgctgccgggcttgagccgcgatgaagcc
aagggaaagatcgaaaatgcgggcgggcacgtctccggctcagtgagcaaaaagacgaac
tacgtcgtggccggcgccgatgccggatcgaagctcgaaaaagcaaacagcctcggcgtt
ccggtgatcgacgaggctgcgcttattaagatgctcgagacggagcaggcttga
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integrated database retrieval system
