Amycolatopsis carbonis: QRX50_48105
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Entry
QRX50_48105 CDS
T10496
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
acab Amycolatopsis carbonis
Pathway
acab03030
DNA replication
acab03410
Base excision repair
acab03420
Nucleotide excision repair
acab03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
acab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QRX50_48105 (ligA)
03410 Base excision repair
QRX50_48105 (ligA)
03420 Nucleotide excision repair
QRX50_48105 (ligA)
03430 Mismatch repair
QRX50_48105 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
acab03032
]
QRX50_48105 (ligA)
03400 DNA repair and recombination proteins [BR:
acab03400
]
QRX50_48105 (ligA)
Enzymes [BR:
acab01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QRX50_48105 (ligA)
DNA replication proteins [BR:
acab03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QRX50_48105 (ligA)
DNA repair and recombination proteins [BR:
acab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QRX50_48105 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QRX50_48105 (ligA)
MMR (mismatch excision repair)
DNA ligase
QRX50_48105 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QRX50_48105 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
HHH_8
Motif
Other DBs
NCBI-ProteinID:
WIX79009
UniProt:
A0A9Y2IGF9
LinkDB
All DBs
Position
complement(9787190..9789367)
Genome browser
AA seq
725 aa
AA seq
DB search
MSSDLPHDQLAAPAEPAVAAQDVTDVPADVRERHGALAEDVRGHQFRYYVLDSPIVSDGQ
FDALLGELQAIEAEYPALVTPDSPTQNVGGTFSTEFTAYDHLERMLSLDNVFDTDEFLTW
VERVEKEIGSAEYLAELKIDGLAINLLYEDGKLTRGLTRGDGRTGEDVTLNIRTLEQVPD
ELTGTDEFPVPKLIEVRGEVFFRVEDFLELNAKMVEAGKPPYANPRNTAAGSLRQKDPRI
TKERRLRLICHGLGKREGFEPVTQSHAYDALVAWGLPVSPHTRVLHTAKELTDHIAYWGE
HRHDAEHEIDGVVIKVDQVALQRRLGTTSRAPRWAIAYKYAPEEAITTLLDIQVGVGRTG
RVTPFAITEPVKVAGSTVARATLHNAEEVKRKGVLIGDRIVIRKAGDVIPEVMGPVVDAR
TGDEREFVMPTHCPECGTELAYQKEGDKDIRCPNTRFCPAQLRERLFHLAGRGAFDIEVL
GYEAAVALLDARVVADEGDVFDLSEDALSEVELFRTKAGDLSANARKLLANLDVAKDRPL
WKVIVALSIRHVGPTAAQALAREFGSIERVEEASEEELADVDGVGPTIAHAVQEWFEVDW
HREIVEKWRRAGVRMEEERDDSIPRHLEGLSIVVTGSLDGFSRDEAKEAIMARGGKAVGS
VSKKTAFVVAGEAPGSKYEKAVQLKVPVLDEDGFRVLLDRGPDAAAEVALDTGTDEEADE
ESSDG
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
gtgagcagcgaccttccccacgaccagttggccgcccccgccgaaccggcagtggcggcc
caggacgtcaccgacgtccccgccgacgtgcgcgaacgccacggcgccctcgccgaggac
gtccgcgggcaccagttccgttactacgtgctggactcgcccatcgtgtccgacggtcag
ttcgacgcgctcctcggcgagctgcaggcgatcgaggccgagtacccggcgctggtcacg
ccggattcgccgacgcagaacgtcggcggcacgttctccaccgagttcactgcgtacgac
cacctcgaacgcatgctgagcctggacaacgtcttcgacaccgacgagttcctcacctgg
gtggagcgcgtcgagaaggagatcggctccgcggagtacctggccgagctgaagatcgac
ggcctggccatcaacctcctctacgaggacggcaagctcacgcgcggcctcacccgcggc
gacggtcgcacgggcgaggacgtcacgctcaacatccgcacgctggagcaggtcccggac
gagctgaccggcaccgacgagttccccgtgcccaagctcatcgaggtgcgcggcgaggtt
ttcttccgtgtcgaggacttcctggagctcaacgcgaagatggtcgaagcggggaagccg
ccgtacgcgaacccgcgcaacacggccgcggggtcgttgcggcagaaggacccgcgcatc
accaaggaacgccggctgcggctgatctgccacggtctgggcaagcgcgagggcttcgag
ccggtcacgcagtcgcacgcctacgacgcgctcgtggcgtggggtctgcccgtttcgccg
cacacgcgcgtgctgcacacggcgaaggagctcactgaccacatcgcgtactggggcgag
caccggcacgacgccgagcacgagatcgacggcgtcgtgatcaaggtcgaccaggtcgcg
ctgcagcgccggctgggcaccacttcgcgcgcgccgcgctgggcgatcgcctacaagtac
gcgccggaagaggcgatcacgacgttgctcgacatccaggtgggagtcgggcgcacgggg
cgcgtcacgccgttcgccatcacggagccggtgaaggtcgcgggttcgacggtggcgcgc
gcgacgctgcacaacgcggaagaggtcaagcgcaagggcgtactgatcggcgatcgcatc
gtgatccgcaaggcgggcgacgtcatccccgaggtgatgggaccggtcgtcgacgcgcga
acgggtgacgagcgcgagttcgtcatgcccacgcactgcccggaatgcggcacggaactc
gcctaccagaaggaaggcgacaaggacatccgctgtccgaacacccgcttctgccccgcg
cagctgcgggaacggctgttccacctggccgggcgcggcgcgttcgacatcgaggtgctc
gggtacgaggcggccgtcgcgctgctcgacgcgcgcgtggtcgccgacgagggcgacgtg
ttcgacctcagcgaggacgcgctgtccgaggtggaactgttccgcaccaaggccggcgac
ctctcggccaacgcgcgcaaactcctggcgaacctcgacgtggcgaaggaccgtccgttg
tggaaggtgatcgtcgcgctgtcgatccgccacgtcgggcccacggcggcgcaggcgctg
gcgcgcgagttcgggtcgatcgagcgcgtcgaggaggcgagcgaggaggagctggccgac
gtcgacggcgtcgggccgaccatcgcgcacgccgtgcaggagtggttcgaagtcgactgg
caccgggagatcgtcgaaaaatggcgacgtgccggcgtgcgaatggaagaggagcgcgac
gactcgatcccgcgccacctcgaggggctgtcgatcgtggtcacgggctcgctcgacggg
ttctcccgcgacgaggccaaggaagccatcatggcccgcggcggcaaggcggtggggtca
gtgtcgaagaagacggcgttcgtcgtggcgggcgaggcgccggggtcgaaatacgagaag
gccgtgcagctgaaggtgccggtgctcgacgaggacggcttccgcgtgctgctggatcgg
ggtccggacgcggctgccgaggtggcgctggacaccggcaccgacgaggaggcggacgaa
gagtcctccgatgggtga
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