Anaerostipes caccae: EYQ97_12490
Help
Entry
EYQ97_12490 CDS
T06754
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
acac
Anaerostipes caccae
Pathway
acac03030
DNA replication
acac03410
Base excision repair
acac03420
Nucleotide excision repair
acac03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
acac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EYQ97_12490 (ligA)
03410 Base excision repair
EYQ97_12490 (ligA)
03420 Nucleotide excision repair
EYQ97_12490 (ligA)
03430 Mismatch repair
EYQ97_12490 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
acac03032
]
EYQ97_12490 (ligA)
03400 DNA repair and recombination proteins [BR:
acac03400
]
EYQ97_12490 (ligA)
Enzymes [BR:
acac01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EYQ97_12490 (ligA)
DNA replication proteins [BR:
acac03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EYQ97_12490 (ligA)
DNA repair and recombination proteins [BR:
acac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EYQ97_12490 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EYQ97_12490 (ligA)
MMR (mismatch excision repair)
DNA ligase
EYQ97_12490 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EYQ97_12490 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
PTCB-BRCT
BRCT_2
DNA_ligase_ZBD
HHH_5
zf-tcix
DUF8054_C
Lar_restr_allev
Rsa3
Nlig-Ia
HHH
Motif
Other DBs
NCBI-ProteinID:
QMW73079
LinkDB
All DBs
Position
complement(2574353..2576287)
Genome browser
AA seq
644 aa
AA seq
DB search
MKELIHILSEASKAYYQENRELMSNFEYDKLYDELLELEKETDTVLADSPSIHVGYELLT
SLEKEPHSSPMLSLDKTKEVGQLEEWLGDQKGLLSWKLDGLTIVLTYQEGVLLKAVTRGN
GEVGEVVTNNAKVFVNLPKKIAYKGTLVIRGEAVIHYSDFRRMNEEMEDLDSRYKNPRNL
CSGSVRQLNNEVTAKRNVRFYGFSVADVPDVDFHNSVEEKFIWARSLGFDIVDYVAVTKD
TVAEEVERFSQAIENNDQPSDGLVLIYDDIAYGRSLGTTAKFPRDSIAFKWADEIAETTL
KEIEWSPSRTGLINPVAIFDPVELEGSTVSRASLHNISVMEELELGVGDQISVYKANMII
PQLAENQTRSGDAPIPDTCPACGGKTEIEEENGIRTLVCPNQFCSAKKIKLFSHFVSRDA
MNVDGLSEASLHKMMDKGLLNELYDLFTLKEHKEEIIEMEGFGEKSFHNLADAIERAKKV
TLPKFLYSLGIANVGLSNAKLICRYFEDDLDAIRNAEAEDFTAIDGIGPIIGEAVSGYFR
LENNKQTVDRLLQYVEIEKRQTEETEKLLDGKTFVITGSLEHYENRKQLQEQIEILGGKA
TGSVTKKTDYLINNNKNSASSKNKKAMELSIPIITEEEFMDMIK
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgaaagagctgatccatatcctgagcgaggcatccaaagcctattatcaggaaaataga
gagctcatgagtaattttgaatatgacaagctttatgatgaacttttggagctggagaaa
gagacagatacggtgctggccgacagcccttcgattcatgtgggatatgaacttctaact
tctctggaaaaagaaccccactcatccccgatgctttctctggacaagacaaaagaggtg
ggacagctggaagaatggctgggagaccaaaagggccttttgtcatggaaactggacggg
cttaccattgttcttacgtaccaggaaggcgttcttttaaaagccgtgacccgggggaac
ggggaagtgggcgaagtcgtcacgaacaatgcaaaggtatttgtaaatctgcccaaaaag
atcgcgtataaaggaacccttgtaatccggggagaagccgtgattcattattctgatttt
cggcggatgaacgaagagatggaagacctggacagcagatataaaaacccgaggaatctt
tgcagcggttctgtcaggcagctgaacaatgaagtgacagccaaacgaaacgtccgcttt
tatggtttttccgtggcagatgttccggatgtggattttcataattctgtagaggagaaa
ttcatctgggcaagatctcttggctttgatatcgtggattacgtggcggtgacgaaagat
acggtggcagaggaagtggagcgcttctcacaggccatcgagaacaatgatcagccttcc
gacggcctggtgctgatctatgatgatattgcatacggcaggagtcttggaacgacagcc
aaatttccgagggattccatcgcttttaagtgggcggatgagatcgcggagacgacactg
aaagagatcgaatggagtccctcaaggacagggctgatcaatcctgtggcgatctttgat
cctgtggaattagagggatctacggtcagcagggccagtctccacaacatcagcgtgatg
gaagagctggaacttggcgtaggagatcagatttctgtatataaggccaatatgatcatt
ccgcagctggcagaaaatcagacaaggagcggcgatgcaccgattccggatacctgtccg
gcctgcggaggaaagacggagatcgaagaagaaaacggaatccgtaccctggtctgcccg
aatcaattctgcagtgccaaaaagattaagctgttttcgcactttgtatccagggatgcc
atgaacgtagacggactttcagaggcatctctgcataagatgatggacaaggggctttta
aacgaactgtacgatttatttaccctgaaagaacacaaggaagaaattatagagatggaa
ggcttcggggagaagtcctttcataatctggcggatgccattgagagggcaaaaaaagtg
acacttcctaagttcttatacagcctcggcattgccaatgtaggtctgtctaatgcaaaa
ctgatctgccggtattttgaggatgatttggatgctatcagaaatgcggaagccgaagac
ttcacagcgatcgacggcattggaccgatcatcggtgaggcggtcagcggatatttccgg
ctggaaaacaataaacagacggtggacagactgcttcaatatgtagagattgagaaaaga
cagacggaagagacagagaaattgctggacggcaagacctttgtcatcacaggttctcta
gaacactatgaaaaccgcaagcagctccaggaacagattgaaattctgggaggaaaagcg
accggctccgtgacgaaaaaaacagactatctgatcaacaacaataaaaattccgcttct
tctaaaaataaaaaagccatggaactctccataccgatcataacagaagaggaatttatg
gacatgataaagtaa
DBGET
integrated database retrieval system
