Alkalicella caledoniensis: HYG86_11160
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Entry
HYG86_11160 CDS
T07204
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
acae
Alkalicella caledoniensis
Pathway
acae03030
DNA replication
acae03410
Base excision repair
acae03420
Nucleotide excision repair
acae03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
acae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HYG86_11160 (ligA)
03410 Base excision repair
HYG86_11160 (ligA)
03420 Nucleotide excision repair
HYG86_11160 (ligA)
03430 Mismatch repair
HYG86_11160 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
acae03032
]
HYG86_11160 (ligA)
03400 DNA repair and recombination proteins [BR:
acae03400
]
HYG86_11160 (ligA)
Enzymes [BR:
acae01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HYG86_11160 (ligA)
DNA replication proteins [BR:
acae03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HYG86_11160 (ligA)
DNA repair and recombination proteins [BR:
acae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HYG86_11160 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HYG86_11160 (ligA)
MMR (mismatch excision repair)
DNA ligase
HYG86_11160 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HYG86_11160 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
RNA_pol_A_CTD
HHH
Nlig-Ia
DUF7340
Motif
Other DBs
NCBI-ProteinID:
QNO15281
UniProt:
A0A7G9W9B9
LinkDB
All DBs
Position
2262375..2264360
Genome browser
AA seq
661 aa
AA seq
DB search
MSKERIEELKELLNKYDYHYHVLDAPLVEDSTYDTLLQELLKLESNNPELTTLDSPTQRV
GGQVLKGFSTVTHKTSMLSLGNAFDEDGLRDFANRIAKTITEPVKFVCELKIDGLAVSLT
YIDGLLVQGATRGDGETGEDITQNLKAIKTIPLRLQQKTNLEVRGEVYMSKESFAKLNQQ
REARGEQLFANPRNAAAGTLRQLDPKVVASRNLSAFFYSLVESNDITDSHSESLHKIKQL
GLTTNPYTEVLESIDEVVKYCHKWHEKRNELPYEIDGIVIKVDSYNQQRSLGFTAKSPRW
AIAFKFPAQKAISVIKDIELTVGRTGAITPTAILEPVVIAGTTVSRASLHNSDYIAQKDI
KIGDTAIVQKAGDIIPEIVEVLKEKRSGEEQEFSMPNACPVCDSEAIRAQDEAALRCINP
ACPAQIKERIIHYASRGAMDIEGLGPAIVEQLYSEGLINDVSDLYKLSVEELIKLERFGQ
KSAENLVVAIDDSKRQSLSRLLFGLGIRFVGQKAAKLLAKEFGDIDLVMDASYEQLIAIP
EIGDKIALSVNEFFAESKAKELIDKLKDLGVNTKEVKDNKIPVESIFTEKTVVLTGTLEK
LSRKEAQEIIENLGGKVSGSVSKKTHLVIAGENAGSKLIKAKELGIEVKGEDYLIEQLDA
N
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaagaaagaatcgaagaactcaaggaattgctaaataaatatgattatcactac
catgtattagatgccccattggttgaagatagtacctatgatacacttttgcaagagtta
cttaagcttgaatcaaataatcctgaactcacaacacttgactcccctacccaaagggtg
ggagggcaggtgcttaaggggtttagtaccgtaactcataaaacatcaatgctaagttta
ggtaatgcctttgatgaagatggtctgagggattttgccaacaggattgcgaaaacaatt
acagaacctgttaaatttgtatgtgaactcaaaatagatggccttgctgtttccctaact
tatattgacggtttacttgtccaaggtgcaacaaggggagacggagaaacaggagaagat
attactcaaaacctaaaagccattaaaacaatcccccttcgtttgcaacaaaaaactaat
ttagaggtccgtggtgaggtttatatgtcaaaggaatcatttgcaaaactaaaccagcaa
agagaagctaggggagaacaattatttgccaacccaagaaatgcagctgctggaaccctg
agacagttagacccaaaagttgtcgcaagcagaaacctaagcgcttttttctattctcta
gttgaaagcaatgacataacagacagccacagtgaaagtttacataaaataaaacagctg
ggtcttaccacaaacccatatacagaggtactagaatcaattgatgaagtggtgaagtac
tgtcataagtggcatgaaaagcgcaacgaactaccctatgaaatcgatggtatagttata
aaggttgattcatacaatcagcaacggagcctaggatttacagcaaaaagcccacgctgg
gccattgcttttaaatttcctgcacaaaaggctatatcagtaataaaggatatcgagcta
actgtgggaagaacaggagcaatcactccaacagctatactagaaccagtggttatagca
ggaacaacagttagtagagcatcattacacaatagtgattacatagctcagaaggatatt
aaaataggtgatacagcaatagtacaaaaagctggagatatcattcctgaaattgtggaa
gtactaaaggaaaagcgttcaggagaagagcaggaatttagcatgccaaatgcatgccct
gtatgtgatagtgaggctattagagctcaagatgaagctgccttaagatgtattaaccca
gcgtgtcctgctcaaataaaagaacgtataattcactatgcctcaaggggagcaatggat
attgaagggttggggcccgccatagttgaacagctctactcagaaggtctaataaatgac
gtttcagacttatacaagctttcagtggaagaactaataaagcttgaaaggtttggacaa
aaatctgcagaaaaccttgtagtagccattgacgactcaaaaagacagtctctaagtcgt
ttgctttttggtttggggatacgttttgtgggacaaaaagctgcaaaacttttagctaaa
gaatttggtgacatagacttagtaatggatgcaagctatgaacaacttatagccattccc
gaaatcggggataagatcgccctgagtgttaatgagttctttgcagaatcaaaggctaaa
gaactaatagataagcttaaagatttaggggtgaatactaaagaagtaaaagataacaaa
atacctgtagaaagcatttttactgaaaaaacagtggtgctaactggtactttagaaaag
ctctctagaaaggaagcccaagaaataattgagaatttgggtggaaaagtatcagggagc
gtgagcaaaaagacccatttagtgatagcaggagaaaacgcaggtagcaagctaatcaaa
gccaaagaactaggaatagaagttaaaggcgaagactacttaatagaacagttagatgca
aattag
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