Alienimonas californiensis: CA12_31730
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Entry
CA12_31730 CDS
T09792
Symbol
pdg_1
Name
(GenBank) Ultraviolet N-glycosylase/AP lyase
KO
K10773
endonuclease III [EC:3.2.2.-
4.2.99.18
]
Organism
acaf
Alienimonas californiensis
Pathway
acaf03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
acaf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CA12_31730 (pdg_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acaf03400
]
CA12_31730 (pdg_1)
Enzymes [BR:
acaf01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
CA12_31730 (pdg_1)
DNA repair and recombination proteins [BR:
acaf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
CA12_31730 (pdg_1)
Prokaryotic type
CA12_31730 (pdg_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HhH-GPD
HHH
EndIII_4Fe-2S
RecR_HhH
PspC
Motif
Other DBs
NCBI-ProteinID:
QDT17062
UniProt:
A0A517PCH4
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All DBs
Position
3964121..3964753
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AA seq
210 aa
AA seq
DB search
MRTVLSRLKAAYPVAECALHHESPFQLLAATILSAQCTDARVNQTTPALFARFPDAPALA
TADVKEVETLVQSCGFFRSKAKNLVGMATALVERHGGEVPRRLEDLVTLPGVGRKTANVV
LGVCFGIAEGVVVDTHVGRISRRLAFTTESDAVKAERDLCELLPRSRWVSFSHRLILHGR
SVCDARKPRCGECVLRSVCPRVGVGGTGEE
NT seq
633 nt
NT seq
+upstream
nt +downstream
nt
gtgcgcaccgtactcagccgcctgaaggctgcgtatccggtcgcggagtgcgcgctgcat
cacgagtcgcccttccaactgctggccgcgacgattctctccgcccagtgcaccgacgcc
cgggtgaaccagacgacgcccgccctgttcgcccgcttcccggacgcccccgccctggcc
acggcggacgtgaaggaggttgaaaccttggtgcagagctgcgggttcttccgctccaag
gcgaagaacctcgtggggatggcgaccgccctggtggagcggcacggcggggaggtgccc
cggcggctggaggacctcgtgacgttgcccggcgtggggcggaagacagcgaacgtggtg
ctgggcgtctgcttcgggatcgcggagggggtggtggtggacacgcacgtcggccggatc
agccgccggctggccttcaccacggagtcggacgccgtgaaggcggagcgggatctctgc
gaactgctgccgagatcgcggtgggtgagtttctcgcaccgcctgatcctgcacggccgc
agcgtgtgcgacgcgcgtaagccgcggtgcggggagtgcgtgttgcggtccgtctgcccg
cgagtgggggtgggagggacaggggaggagtga
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