Acinetobacter calcoaceticus: BUM88_03800
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Entry
BUM88_03800 CDS
T05452
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
acal
Acinetobacter calcoaceticus
Pathway
acal03030
DNA replication
acal03410
Base excision repair
acal03420
Nucleotide excision repair
acal03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
acal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BUM88_03800 (ligA)
03410 Base excision repair
BUM88_03800 (ligA)
03420 Nucleotide excision repair
BUM88_03800 (ligA)
03430 Mismatch repair
BUM88_03800 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
acal03032
]
BUM88_03800 (ligA)
03400 DNA repair and recombination proteins [BR:
acal03400
]
BUM88_03800 (ligA)
Enzymes [BR:
acal01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BUM88_03800 (ligA)
DNA replication proteins [BR:
acal03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BUM88_03800 (ligA)
DNA repair and recombination proteins [BR:
acal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BUM88_03800 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BUM88_03800 (ligA)
MMR (mismatch excision repair)
DNA ligase
BUM88_03800 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BUM88_03800 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
FmiP_Thoc5
5_3_exonuc
zf-C2H2_ZFAND2
Motif
Other DBs
NCBI-ProteinID:
AQZ80807
LinkDB
All DBs
Position
794191..796230
Genome browser
AA seq
679 aa
AA seq
DB search
MATTSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPEQVQSDSP
TTKVGGQALSKFQSVTHVVPMLSLGNVFNQEDLFAFARRVEERLPNQKVQYEVELKLDGL
AISLWYENGVLIRGVTRGDGETGEDITQNVKTIRNLPKVLHSDHFEIPRLLEVRGEVLMP
KSGFEKLNADQEAKGDKTFANPRNAAAGSLRQLDPNIAAGRPLAFYAYGIAQCEPNHGLT
TMHDSLQWLTQLGFEIAERQYLCNSIQEVQQRYEQIQQERPDLQVEIDGMVVKVDDLKQQ
QQLGFLSREPRWATAYKFPAQAALTTVDQIDWQVGRTGTLTPVARLNPVFVGGVTVSNVT
LHNIGEIHRLDVRVGDTVSVYRTGDVIPKVEKVWPEFRSPDAEIVHLPESCPVCASPVVM
PEGEALARCSGGLYCAAQRIEAIRHFVSRKALDIEGLGDRWVESLLHLDLLKDVADIYHL
HEHRETLLGIEKMGEKSVQNLIDAIEASKKTTLARFIYALGIRGVGETTARMLANTFQTL
EALKAADIEALKKTPDVGDITAEWIADFFLAPHNIEVLDRLIAAGIHWDAPTAPTRQPLN
GESWVLTGTLEQMTRDQATQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIVV
MNETDFLSLMASYGQTLSE
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atggcaacaacttccgtgatcgaacagatgcgtcagcttattcaactgattgcaaagcat
aaccatgcatattatgtgatggatcagccgacaatctcggacagtgaatatgatcattta
tttcaccagttaaaagctttagaagagcaatatccagaacaggttcaatcagactcccca
acgacaaaggtaggcggacaagcactctctaaatttcaaagtgtgactcatgtggttcct
atgctttctttgggaaatgtttttaatcaggaagacttgtttgcatttgcacgccgtgtc
gaagagcgtttgcccaatcaaaaagtacaatatgaagtagaactaaaactcgatggtctt
gcgatttctctttggtatgaaaatggtgtgttaatacgtggtgttacacgtggtgacgga
gaaaccggagaagacattacccagaacgttaaaacgattcgcaacttgcctaaagtgttg
cattcggatcattttgaaattccacgactgcttgaagtacgcggtgaagtgctcatgcca
aagtctggcttcgaaaaactcaatgccgatcaggaagcaaaaggcgataaaacgtttgcg
aacccacgtaatgccgcagctggtagtttaagacagctcgatccaaatattgctgctggc
agacctttagcattttatgcgtatggtattgcacagtgcgaaccaaatcatggcttaacc
acgatgcatgatagcttgcaatggctaacacaacttggatttgaaattgctgaacgtcag
tatctatgtaattcaattcaggaagtacaacaacgctacgagcaaattcagcaagaacgt
cccgatttacaagttgaaattgatggaatggtcgtaaaggttgatgacttaaaacaacaa
caacaacttggttttttaagtcgtgagccacgttgggcgactgcctataaattccctgca
caagctgcattaactacggtcgatcagattgattggcaagtggggcgtacaggtactttg
actcctgtagcacgcttaaaccctgtatttgtggggggtgttacggtttccaatgtaact
ttacacaacattggtgaaatccatcgtcttgatgtacgtgttggcgatacggttagtgtt
tatcgtactggcgatgttattcctaaagtagaaaaagtctggccagagttccgctcacct
gatgctgaaattgtacatttacctgaaagctgtcctgtttgtgcctcacccgttgtaatg
ccagaaggggaagccttagcacgttgttctggtggtctttactgtgctgctcagcgaatt
gaagccattcgtcatttcgtgtcacgtaaggcgcttgatattgaaggtttgggcgatcgt
tgggtagaatctttattacatctcgatttgctcaaagatgttgccgatatctatcattta
catgagcaccgagaaactttactcggtattgagaaaatgggcgagaagtcggtacaaaat
ctgattgatgccatcgaagccagtaaaaagacaactcttgcgcgttttatttatgcttta
ggaattcgtggggtaggtgaaactactgccagaatgttagccaatactttccaaacttta
gaagccctaaaagctgccgatattgaagctttaaagaaaacaccggatgtcggcgatatt
acagcagaatggattgctgactttttcttggcacctcataacattgaagtgcttgatcgc
ttaattgcagctggaattcattgggatgcgccgactgcaccaacacgccagccattaaat
ggcgagagttgggttttaacaggcacattagagcaaatgacccgtgatcaagcgactcaa
atgctacaagccttaggtgcgcgtgtgagcggtagtgtatcgagcaaaacgaaatgtgtt
gttgcgggtgagaaggctggttctaagttagaaaaagcagcaaaacttggcattgtcgtt
atgaatgagactgatttcttatctcttatggcgagctatgggcagaccttaagcgaataa
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integrated database retrieval system
