Acaryochloris sp. 'Moss Beach': HRE53_04425
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Entry
HRE53_04425 CDS
T09726
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
acam
Acaryochloris sp. 'Moss Beach'
Pathway
acam03030
DNA replication
acam03410
Base excision repair
acam03420
Nucleotide excision repair
acam03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
acam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HRE53_04425 (ligA)
03410 Base excision repair
HRE53_04425 (ligA)
03420 Nucleotide excision repair
HRE53_04425 (ligA)
03430 Mismatch repair
HRE53_04425 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
acam03032
]
HRE53_04425 (ligA)
03400 DNA repair and recombination proteins [BR:
acam03400
]
HRE53_04425 (ligA)
Enzymes [BR:
acam01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HRE53_04425 (ligA)
DNA replication proteins [BR:
acam03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HRE53_04425 (ligA)
DNA repair and recombination proteins [BR:
acam03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HRE53_04425 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HRE53_04425 (ligA)
MMR (mismatch excision repair)
DNA ligase
HRE53_04425 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HRE53_04425 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
HHH
Motif
Other DBs
NCBI-ProteinID:
UJB70365
LinkDB
All DBs
Position
complement(990852..992885)
Genome browser
AA seq
677 aa
AA seq
DB search
MNTVSSSDQTRVQELRQLLQKASYAYYGLDAPMMEDAIYDQLYHELVDLETQYPQLITSD
SPTQRVGERPATQFFSVQHRIPLYSLENAFDRGDMETWDERWHKLVPNLKKAPGYVTELK
IDGSALALTYENGVLVRGTTRGDGTAGEEITQNVRTIRSIPLRLNIEHPPEWLEVRGEAF
LGLQVFDQINRDRIQAGEAEFANPRNAAAGTLRQLDSKVVAERKLDFFAYTIHISGPTND
LSLPQSQWQALETLKQLGFRVNPNRRQCKSLKDVQTYYDDWSLKRLDLPYLTDGVVIKLD
DLGVQDELGFTQKFPRWAIAWKYPPEEAATRIEQITVNVGRTGALTPVAEFKPVQLAGTT
VSRATLHNRDRISELDIHIGDTVVVRKAGEIIPEVLRVLPELRPADAQPYQMPTECPSCG
QPAVQLETEAVTRCVNASCPAILRGSLIHWVSRGALDIDGLGEKIVGQLADSHMVQSVAD
LYELTEDKLMSLDRMGTKLARKIVGAIATSKQQPWHRVLYGLGIRHVGSVNAQLLTENYS
TVEALMAVDGDAIATIHGIGPEIAQSVYEWFQTPTNQTLIQRLQVAGLQTAAIVSEPTRP
QTLSGQTFVVTGTLPTLKRDQAKQLIQDAGGKVTGSVSKNTSYVVVGADAGSKLTKAQSL
GIQQLSEADLLELLQTA
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
gtgaacacggtatcctcttcagatcaaacgcgggttcaagagctgcggcagttgctgcaa
aaagcgagctatgcctactacgggttagatgcgcccatgatggaagatgccatctacgac
cagctctatcacgagctagtggatttggagacccaatatcctcaactgatcacgtctgat
agccctactcagcgagtaggggagcgacctgctactcagttcttttcggttcagcaccgg
attcccctctatagcctggaaaatgcctttgatcggggagatatggaaacctgggatgag
cgctggcataagttggttcctaacctgaagaaagcgccagggtatgtgaccgaactcaaa
attgacggctcggccttagccttgacctatgagaacggtgtattggtgcgaggtaccacc
cgaggggatggtactgcaggagaagagattacccagaatgtgagaaccatccgctcgatt
cccctgcgcttgaatattgaacatccgcccgaatggctagaggtgcggggggaagccttt
ttaggattacaagtgtttgaccaaattaaccgcgatcgcatccaagcgggagaagccgag
tttgccaatcctcgtaatgccgctgcaggtaccctccggcagctcgactccaaggtggtg
gctgagcgcaagctggattttttcgcctataccattcatatttctggccccacgaatgac
ttgtctcttcctcaatctcaatggcaggcgttagagaccctgaagcagctgggctttcgg
gttaatcccaatcgacgccagtgcaagagcttgaaggacgttcagacctattatgatgat
tggtccttaaagcgtttggatctcccctatttgacggatggggtggtgattaaactggat
gacctaggggtgcaggacgagttgggatttacccagaagtttccccgctgggccattgcc
tggaaatatcccccggaagaggcggcgacccgcatcgagcagattacggtgaatgtggga
cggactggagcgctcacccccgtagcggaattcaagccggtgcagttagccgggacgacg
gtatcgagggcaacgctgcataaccgcgatcgcatctcggaactagacatccacatcggc
gatacggtagtggtccgtaaagctggagaaatcattcctgaagtcctgcgggttttgcct
gagttgcgtcctgccgatgcccagccctaccagatgcccacagaatgcccgagctgtggg
caacctgccgttcagctggaaactgaagcggtgacccgctgcgtgaatgcttcttgtccg
gctatcttgcgtggatcgctaattcactgggtgagtcgaggggccttagatattgatggt
ttaggggaaaagattgtcggtcaactggccgactcccatatggtccaatctgtcgctgac
ttgtatgagctaacggaagataagctgatgagcttagaccgaatgggaaccaagctggcg
cggaagatcgtgggtgcgatcgcaacttcaaaacaacagccttggcatcgggttctttac
ggattggggattcgacatgtagggagtgtgaatgctcaactgttaacggaaaactacagc
accgttgaagccttaatggccgtagacggggacgcaattgccaccatccacggcattggc
cctgaaattgctcaatctgtctatgaatggtttcaaacccccactaaccaaaccctcatt
caacggttgcaagtagcagggctgcaaactgcagccatagtctctgaacctactcgtcct
caaaccctatctgggcagacttttgtggtgacagggacgttgcctaccttgaagcgagat
caggccaagcaactgatccaagatgcaggggggaaagtgacgggatccgtgagtaaaaat
acatcctatgtggtcgtaggtgcagatgcaggctctaaactcaccaaagcacaatctttg
ggcatccagcagctctctgaagcagatttacttgaacttttacaaactgcttga
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