Actinomyces capricornis: MANAM107_18970
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Entry
MANAM107_18970 CDS
T09393
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
acap
Actinomyces capricornis
Pathway
acap03030
DNA replication
acap03410
Base excision repair
acap03420
Nucleotide excision repair
acap03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
acap00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MANAM107_18970 (ligA)
03410 Base excision repair
MANAM107_18970 (ligA)
03420 Nucleotide excision repair
MANAM107_18970 (ligA)
03430 Mismatch repair
MANAM107_18970 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
acap03032
]
MANAM107_18970 (ligA)
03400 DNA repair and recombination proteins [BR:
acap03400
]
MANAM107_18970 (ligA)
Enzymes [BR:
acap01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MANAM107_18970 (ligA)
DNA replication proteins [BR:
acap03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MANAM107_18970 (ligA)
DNA repair and recombination proteins [BR:
acap03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MANAM107_18970 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MANAM107_18970 (ligA)
MMR (mismatch excision repair)
DNA ligase
MANAM107_18970 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MANAM107_18970 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
ILEI
HHH_3
BRCT_2
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
BDA65063
UniProt:
A0ABN6K684
LinkDB
All DBs
Position
2299037..2301571
Genome browser
AA seq
844 aa
AA seq
DB search
MHTASPHETAPGAPAAPSRSGGAGGLSAIPADRRARWNELVLSIEGARDAYYNALDAQSP
MSDAEYDRLYRELEELESVYPALAAAGSPTQSVGGRATTDFAPAPHHERMYSLQDVFSIE
EVQEWAARMVAETGIPDEDLAMTAEVKIDGLAVALTYEDGVLTRAATRGDGTTGEDVTGN
VRTIADVPRVLSGTGHPRLLEVRGEVYFPVKGFEAFNEARRSQNVEREASGAPLLQVFAN
PRNAAAGSLRQKNPAITASRPLSMIAHGVGAVILHDGQGPVAQQHEWYERLQAWGLPVSP
YNAVVRGRAGREAYIERYAAHRHDLLHEIDGIVFKIDDRAVQRALGATSRVPRWAAAYKY
PPEEVRTRLLDIDVQVGRTGRVTPFGIMEPVLVAGSRVARATLHNATEVVRKGVLIGDTV
IVRKAGDVIPEILGPVPESRDGSERGFVMPEHCPSCGTRLAPAKDGDVDVRCPNTRSCPA
QVTERIAHIGARGALDIEGLGDEAASALTRPDAGRTEALAALAAGHSLETERGSISIPAQ
ELEAMAVSERVDAVAERIRAAGILEQPPVLDGEAGLFDLAEEDLREVFVWRAVTRRGTPT
GDWRLSRFFWTKQVYAPDGRVKRPTAASRSTTAMLAQLRAARDRPLWRILVALSVRHVGP
TAARALAERFGSLEALCQADEDQLAQVEGVGPTIAASWVAWREVDWHREILQRWKAAGVR
MVDDGPTAAFPPAGAPGDGGGGAAAGAGAPGAQRTLEGLTIVVTGSLEGYTRDEAKEAII
SRGGKAAGSVSKRTSYVVVGDKAGSKEAKARQLGLPILDEEGFTALLEGGPTAVDAGAAG
GQSD
NT seq
2535 nt
NT seq
+upstream
nt +downstream
nt
atgcacaccgccagtcctcatgagaccgcccccggggcgcccgcggctccttcgagatca
gggggggctggggggctatccgccatccccgccgaccggcgcgcccggtggaacgagctg
gtcctgagcatcgagggcgcccgcgacgcctactacaacgccctcgacgcccagagcccc
atgtccgacgccgagtacgaccgcctctaccgcgagctggaggagctggagtccgtctac
ccggccctggccgcggcgggctcgcccacccagagcgtgggcgggcgggccaccaccgac
ttcgcccccgccccgcatcatgagcgcatgtactccctccaggatgtcttctccatcgag
gaggtccaggaatgggcggcgcgcatggttgccgagaccggcatccccgacgaggatctg
gccatgaccgctgaggtcaagatcgacggcctggcggtggccctgacctatgaggacggc
gtcctcacgcgggcagcgacccgtggggacggcaccacgggcgaggatgtcaccggcaat
gtgcgcaccatcgccgatgttccccgcgtcctgtcggggaccggccacccccgcctgctc
gaggtccgcggggaggtctacttcccggtcaaggggttcgaggccttcaacgaggcccgg
cgcagccagaacgtcgagcgcgaggccagtggggcccccctcctccaggtcttcgccaat
ccccgcaatgccgccgccggctccctgcgccagaagaacccggccatcacggcctccagg
cccctgtcgatgatcgcccatggggtgggggcggtcatcctccacgacggccaggggcct
gtcgcccagcagcacgagtggtatgagcgcctccaggcctggggccttccggtctccccg
tacaacgccgtcgtgcggggccgcgccgggcgcgaggcctacatcgagcgctacgccgca
caccgccacgacctgctccacgagatcgacggcatcgtcttcaagatcgatgaccgtgcc
gtgcagcgggcgctgggcgccacctcccgcgtgccccgctgggcggcggcctacaagtac
ccgcccgaggaggtgcgcacccgcctgctggacatcgacgtccaggtggggcgcaccggc
cgcgtcacccccttcggcatcatggagcccgttctggtggcgggctcccgggtggcccgg
gccaccctccacaacgccaccgaggtggtccgcaagggcgtgctcatcggggacaccgtc
atcgtgcgcaaggccggtgatgtcatccccgagatcctggggccggtgcccgagtcgagg
gacggctcggagcggggcttcgtcatgcccgagcactgcccctcctgcggcacccgcctg
gccccggccaaggacggcgacgtcgatgtgcgctgccccaacacgcgctcctgccccgcg
caggtgaccgagcgcatcgcccatatcggcgcgcgcggggctctggacatcgagggcctg
ggtgatgaggccgccagcgccctgacccggcccgacgccgggcgcacggaggccctggcc
gccctggccgcgggccacagcctggagaccgagcgcggcagcatctccatcccggcgcag
gagctggaggcgatggcggtctccgagagggtcgatgccgtcgccgagcggatccgggcc
gcggggatcctcgagcagccgccggtcctcgacggcgaggcgggcctgttcgacctggcc
gaggaggatctgcgcgaggtcttcgtatggcgcgcggtcacccggcgcgggacccccacc
ggcgactggcgtctgagccgcttcttctggaccaagcaggtctacgcccccgatggccgg
gtcaagaggcccaccgcggcatcccggagcaccacggcgatgctcgcccagctccgggcg
gccagggaccggcccctgtggcgcatcctcgtggccctgtccgtgcgccatgtggggccc
acggcggcccgcgccctggccgagcgcttcggctccctggaggccctgtgccaggccgac
gaggaccagctcgcccaggtcgagggcgtgggccccaccatcgccgcctcctgggtggcc
tggcgcgaggtggactggcaccgcgagatcctccagcgctggaaggccgcgggtgtgcgc
atggtcgacgacggccccaccgcggccttcccgcccgccggcgcccctggtgacggcggt
ggcggcgcggctgcgggggccggcgcccccggggcgcagcgcaccctggagggtctgacg
atcgtggtcaccggctccctggagggctacacccgcgatgaggccaaggaggcgatcatc
tcccgagggggcaaggccgccgggagcgtgtcgaagaggacgagctacgtcgtcgtgggg
gacaaggccggttccaaggaggccaaggcccgccagctgggcctgccgatcctcgatgag
gagggcttcaccgccctgctggagggcggccccacggcggttgatgccggcgccgccggt
gggcagtcggactga
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