Aquarana catesbeiana (American bullfrog): 141106006
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Entry
141106006 CDS
T11018
Symbol
PCDH15
Name
(RefSeq) protocadherin-15
KO
K16500
protocadherin-15
Organism
acat Aquarana catesbeiana (American bullfrog)
Brite
KEGG Orthology (KO) [BR:
acat00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
acat03037
]
141106006 (PCDH15)
04515 Cell adhesion molecules [BR:
acat04515
]
141106006 (PCDH15)
Cilium and associated proteins [BR:
acat03037
]
Primary cilia and associated proteins
USH complex and associated proteins
141106006 (PCDH15)
Cell adhesion molecules [BR:
acat04515
]
Cadherins
Protocadherins
141106006 (PCDH15)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
PCDH15_12th
ECD
Cadherin_FAT4_N
Cadherin_CELSR2_9th
Fibulin_C
Rieske_2
Motif
Other DBs
NCBI-GeneID:
141106006
NCBI-ProteinID:
XP_073452440
LinkDB
All DBs
Position
LG08:complement(116576931..118656364)
Genome browser
AA seq
1711 aa
AA seq
DB search
MIRKLWNLMTFAVIFGHCLNQAQSDGDWQFEDCELARPGPPATIVAIDEESANGTIIVDN
MQITGTAGGPNPTIRLTLKENADYWVILDPVTQKLYLNSTGRVLDRDPPMSIQTFGVKIE
CGNLKGGTIFHDVRVVVRDRNDNSPSFMQRSYYTTINELTPVGTTIYNGFADKGATDIDD
GPNGQIEYFIQYNPNDTESQKTFDIPLPQSGAVVLRRRLNYEERTRYYVIVQANDRPLNN
NERRTSTTTLTVDVLDGDDLGPRFLPCEPVPNTRDCRPLTYKASLPELSPPAKVNPVNVT
PPIKAEDQDRDIQPISDRPGILFSILVGTPGDYTEYFHMNRTTAVLTLLKPVNRDLHQKF
DLVIKAEQDNGHPLPAFANVHIEILDENNQAPYFTLATYQGYILESSPVGTTISDNSNLT
APLKLMALDNDIEETKDPQLYLYLVDYSTVFAVTSSGITRHLTLLQPVDRERQQIYKFSI
VASDGTQESTPVTVNIVVIDANDNTPTFSNISYNVKIYTDMAPGENVIRLTAVDADEGTN
GQIIYEILAGAQGQFVINNKSGVISISPGVTLTVGESYALTVKASDNAPPAQRRSSITTV
YIEVLPPNNQSPPRFPQLMYNLEISEAMRIGANLLNLQATDREGDPITYLIQNGDPQKVF
NITVSSGLLILAKTLDRESTDRYILIVTASDGRPDGTSTATVNVLVTDVNDNNPVFDLYL
PRNLSVQEEEVNAFVGQVRATDPDAGVNGQVRYSLANLNNIFRITSNGSIYTSVKLDREI
RDTYELTVEATDSAPADPRRSTITLTITVTDIDDNSPVFTNTSYSVSVPENMMPGTVFLQ
VQAKDADLGANITYRIRSQEILQLFTINSSSGELSLLKPLDFESFTGKEAVYVFLVEAFD
AAGSMPPGIATVTVRVKDMNDFSPVFSRALYWGMVAPDALKGTVIVTVTAEDYDPPGTPA
SYVRYKVDVAQFPYSASIFDVEEKTGRVIARVNLNEDPSTIFRLGVIAYDDGDPVKSNST
MVIITVLQPSVIPRFTQEEYRSPPLSETAPIGTTVTVVSAAALNQTIVYTIISGNDQGAF
AIDNITGVITVVKPLDYENTTSYELRIQADSMHVARYNLRATSKSNTAIVYIEIQDENDH
APQFSKKLYLGGVSEDARMFASVLKVKTTDKDTGNYSSNSYKLIIPTIKDGKEGFVIEFY
SGVIKTAMLFKNMRRSYFKFEVVATDDYGRGLSSKADVIVSVVNQLDMQVIVSNVPPTVV
EQNIDDLISILERYVQDQIPGAAVVVESIGARRYGDGFSEEDYTQCDLMIYAVDPQTNRA
ISRNELFKFLDGKVLDINKQFQDYIGLGGRILEIRTPDVVANVKKQAQAVGYTEGALLAL
AIIIILCCIPAILIVMVSYRQFKERQAECAKTARIQMALPAGKSSAPAANNLYEELGDST
MRGYAHPEQQQLLRPSLLKPEELSMESGIDPGQEYYGQDYYSYEHGYELPQYGSRRRLLS
PSGMYEDYGEVVAENDGGYYYSPHGPSTEGDVARKKKIKLVVDREYETSSTGEESAPETQ
KNRLSHPNIQNNINGNLYIAQNGSVVRTRRSCLTNNLKMTSPTRLGKHFKKLDRLGVTHE
ENIQLNTLSKEASIKLNNRPSSITLASSTGMTKNAPKIGDNKLKSTDEQESVVDNEDIKE
PLEFHSDQTQSDEEELWMGPWNNLHIPMTKL
NT seq
5136 nt
NT seq
+upstream
nt +downstream
nt
atgatacgaaagctctggaacttgatgacttttgcagtgatatttggacattgcttaaac
caagcacagagtgatggagactggcaatttgaggactgtgaactggctagacctggtcca
ccagcaactatagttgccattgatgaagaaagtgcaaatggaacaatcatagtggacaat
atgcaaattacagggactgctggtggacctaatcctactataaggctaactttgaaagaa
aatgcagactactgggtgatactggatccagttactcagaagttatatcttaacagcact
gggagagtactggatagagatcctcctatgtccattcagacctttggtgttaaaatagaa
tgcgggaatttaaagggtggaacgattttccatgatgtacgagtagttgtaagagacaga
aatgacaattcacccagttttatgcaaaggagttactacacaaccatcaatgagttaaca
cctgttggaaccacaatttataatggatttgcggataaaggtgctacagacatagatgat
ggtcctaacggccagattgaatattttatccaatacaacccaaatgacacagaatcccaa
aagacctttgacatccccctcccacagtctggagcagttgtgttacggcgcaggttgaat
tatgaggaaaggacacggtattatgtcatagtacaagctaatgatcgtccacttaataat
aatgaaagaaggacaagtacaactactttgacagtggatgttcttgatggtgatgacctt
ggtcctcggtttcttccctgtgaacctgtgccaaatacacgtgattgtcgaccattaact
tacaaagcaagccttccagaactcagccctcctgcaaaagtaaatcctgtcaatgttacc
ccacctataaaagccgaagaccaagatcgggatattcaaccaatatctgaccgacctggc
atccttttctccatccttgttggcactcccggggattatactgaatatttccatatgaat
cgtacaaccgctgtgctcacactcctgaagccagtaaatagagatttacaccagaaattt
gatttggttattaaggctgagcaagacaatggtcatccacttccagcatttgcaaacgtt
cacattgaaattttggatgagaacaatcaggctccttattttactttggctacataccaa
ggctacatactggagtcttctcctgttggaacaactatttctgacaattctaacttaact
gctccgttgaaattgatggctttggataatgatattgaagagacaaaagatccccagctc
tatctatatttggtagactacagcacagtgtttgcagtaacctcatctggaattactcgc
catctcacattgcttcaaccagttgaccgtgaacgtcagcagatttataaattctcgata
gttgcttctgatggaacccaagaaagtaccccagtaactgtcaacattgtggttatagat
gcaaatgacaacactccaacattttctaacatatcctataatgtcaaaatctatacagat
atggcaccaggcgagaatgttataagactcacagctgtggatgcagatgaaggaactaac
gggcagattatttatgaaatactagctggagctcaggggcagtttgtcatcaataacaag
tccggtgtcatcagcattagtccaggagtcacactgacagttggagagtcatatgctcta
acagtaaaagcatctgataatgcccctcctgctcaaagaaggagttcaatcactactgtt
tatattgaagtactaccaccaaacaatcagagtcctccacgctttccacaattgatgtac
aaccttgaaatcagtgaagccatgcgtataggtgctaatcttttaaatcttcaggctaca
gacagagaaggagatcctattacatatttaatacagaatggagaccctcagaaagtcttt
aatataacagtaagctctggacttttaatcttggcaaaaactctggacagggaaagtacg
gaccgttatattttgatagttacagcttcagatggccggcctgatggaacatcaactgca
actgttaatgtgctggtgacggatgtgaatgacaacaacccagtctttgatctttacttg
cctagaaatctctccgtccaagaggaagaagtgaatgcttttgtgggtcaagtcagagcc
actgatcctgatgctggagtcaatggtcaagtacgttacagtctggcaaaccttaataat
attttccggatcacctccaatggaagtatttatacatctgtaaaattggatagggaaata
agagacacttatgaactcactgtggaggcaacagacagtgcacctgctgatcctcgtcgg
tctacaataactcttactatcacagttactgatattgatgacaacagccctgtttttaca
aatacttcttattctgtgtccgtacctgagaacatgatgccagggacagtttttctacaa
gtacaggcaaaggatgctgatcttggtgctaatattacatatcggataagatcgcaggaa
attttgcagctgtttacaattaactcatcatcaggagagctatctctgttaaaacctctt
gactttgaatcatttacaggaaaggaggccgtatatgtctttcttgtggaggcttttgat
gctgcaggaagcatgccccctggaattgctactgtaacagttagagtaaaggatatgaat
gatttctcgcctgtgtttagtcgagcactctactggggaatggtggctccagatgcccta
aagggcacagtgatagttacagttacagctgaagattatgatcctccaggtacaccagca
agttacgtcagatataaagtagatgttgcccaatttccatacagtgccagcatatttgat
gtggaagaaaaaactggtcgtgtcatagcaagggtcaatcttaatgaggatcctagcacc
atattcaggttgggtgtcattgcttacgatgatggagatccagtgaagtctaacagcaca
atggtaataataacagttctgcagccatctgtaatcccacgattcactcaagaggaatat
aggtcacctccattgagtgaaacagctccaattgggaccactgtcactgtggtatcagct
gcagcattaaatcagactattgtgtatacaatcatctcagggaatgatcaaggtgcattt
gccattgataatatcacaggggttatcaccgttgtaaaaccactggactatgaaaacact
acaagctatgagcttagaattcaagctgattctatgcatgtggccagatataatctacga
gccacctctaaaagtaacacagctatagtgtacatagaaatacaggatgaaaatgaccat
gctccacaattttcaaaaaagctttacctgggaggagtgtcagaagatgctagaatgttt
gcatcggtgctgaaagtgaagactacagataaagacactggaaactacagcagtaacagc
tataaactaattataccaaccattaaagatggtaaagaaggttttgtgattgaattctat
agtggtgttatcaaaacagcgatgctcttcaagaacatgagacggtcttattttaaattt
gaagtggttgcaacagatgattatggaagaggtttaagcagcaaggcagatgtgattgtt
tctgtggttaatcagctggatatgcaagttattgtctctaatgtccctcctacagtcgtg
gaacaaaatatagatgatcttattagcattttagagcgttatgttcaagaccaaattcca
ggtgctgcagttgtagtagaatcaattggtgccagaagatatggagatggcttctctgaa
gaggactacactcagtgtgacctgatgatttacgctgttgaccctcagacaaacagggcg
atatcacgtaatgaactttttaaatttttagatggtaaagtgcttgacatcaataaacag
tttcaagactacattggccttggaggacgtattttggagattcgaaccccagatgttgta
gccaatgttaagaagcaagcccaagctgtaggctacactgaaggagctttgctagcactg
gctattattatcatcctctgttgtataccggctattttaattgtaatggtcagctacaga
caatttaaagagaggcaagctgagtgtgcaaagacagcgaggatccagatggcattgcca
gcaggcaaatcatcagcccctgctgccaataatctgtatgaagagctgggtgacagcact
atgcggggttatgctcatcctgagcaacaacaattgctgagaccatctctcctaaaacct
gaggaattgtcaatggagtctggcattgatcctggtcaggagtattatggacaagactat
tacagctatgagcatgggtatgaactgcctcagtatggaagccggcgaagattactgtca
ccatctggcatgtatgaggattatggagaagtggttgctgagaacgatggtggatattat
tatagtcctcatggacctagcacagaaggagatgttgctagaaaaaagaagatcaaatta
gttgtggatcgagaatatgaaactagttcaacaggagaagagagtgctcctgaaactcaa
aaaaaccgtctcagtcacccaaacatacaaaacaatattaacggaaatctatatattgcc
caaaatgggtctgtggttagaaccagacgttcatgccttacaaacaatcttaaaatgact
tcccctacaaggctcgggaagcacttcaagaaattggacagacttggagtgacacatgag
gaaaacatccagttaaacacattatcaaaggaggcttctatcaaacttaataacaggcct
tctagtataacattggcatctagcactggcatgaccaaaaatgcacctaaaattggagac
aataaattaaaaagcacagatgaacaggagtcagttgttgataatgaagacattaaagag
ccattggaattccacagtgaccagactcagtcagatgaggaagagttatggatgggacct
tggaacaatcttcacataccaatgacaaaactatga
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integrated database retrieval system
