Aquarana catesbeiana (American bullfrog): 141127728
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Entry
141127728 CDS
T11018
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
acat Aquarana catesbeiana (American bullfrog)
Pathway
acat03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
acat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
141127728 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acat03400
]
141127728 (LIG4)
Enzymes [BR:
acat01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
141127728 (LIG4)
DNA repair and recombination proteins [BR:
acat03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
141127728 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
LSM12_LSM
Motif
Other DBs
NCBI-GeneID:
141127728
NCBI-ProteinID:
XP_073470577
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All DBs
Position
LG02:complement(286855015..286889265)
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AA seq
911 aa
AA seq
DB search
MSASSSSSSLVKGTVASEVPFADLCRTLEKVQGTKNRADKVNILKQFVDSWRKFHDALHK
NNPKTTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIKVLGLPKEGKDALKLLNYRTP
TGSSSDTGDFAAIAYFVLKSRCRKDGNLTIQDVNDQLDAIASNNAARKKELIEKSLLNVI
ANTTALEQKWLIRMIIKDMKLGFSQQTVFSIFHRDAAELHNVTTDLEKVCVQLHDPSVCL
SDVSISIFSAFKPMLAAIANIQRIEKQMNHQSFYIETKLDGERMQLHKDGDVYKYFSRNG
FDYTQQFGGSPLEGSLTPFIHNVFCRDLQNCILDGEMMAYNPNTKAFMQKGNKFDIKRMV
DDSDLQTCYCVFDILMFNNQKLAHETLRKRYDILHEIFTPITGRIHIVQKKEATTRKEVV
DALNEAIDNREEGIMVKDPMSIYKPDKRGEGWLKIKPEYVNGLMDELDLLIVGGYWGKGQ
RGGMMSHFLCAVAETPVPGDKPSVFHSVCRIGSGYTMKELYDLGIKLAPHWKVYRKRDPP
SDILCGIEKPEVYIQPCNSVIIQVKAAEIVPSDMYKTNCTLRFPRIEKIREDKDWYDCMT
VDDLEQFREKASGKLASKHLDVNDEPQEKKRKKAPKIRKVIGVVSHLKAPDLSNITKQSN
MFEDVEFCVMSGTEEHSKADLESMIAACDGIVVQNPGQDTYCIIAGAINIRVKNIISSDK
HDVVRAAWLLECFESKEIVPWQPQHMIHMCPSTKEHFASEYDCYGDSYITDTNESELKDL
FSRMPDTKEKIPLDMIADLEQRYSWEETFHSIFRQCVAYIDMFTTINDPDTKIPTSSLNI
TALQLRFHGAKVVNCLQEGVSHVIVGDDKSRLTEIKIQRRTFQRKFKIVSASWVLDSLKL
GKFQMEQNYLL
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcatctagctcctcaagttctttggtcaagggcactgtagcatcggaagtccca
tttgctgatctttgccgtactttggaaaaagttcaggggacgaagaaccgagctgataaa
gtaaatattttaaagcagtttgttgactcatggaggaaatttcatgatgctctacataaa
aataaccccaagacaacagactctttctatccagcaatgcgacttatcctgccacagttg
gaaagggagagaatggcatatggaatcaaagagactatgcttgccaaactatatatcaaa
gttctgggcttgcccaaagaaggtaaagatgctttgaaacttttaaattatagaactcct
actggctccagttctgacactggagattttgctgcgattgcttactttgttcttaaatca
cggtgtcgaaaagatgggaacttgaccatacaagatgtcaatgatcagttggatgcaata
gcaagcaacaatgcagctagaaagaaagaactaatagagaaaagccttctgaatgtgatt
gctaatactactgccctggaacagaagtggcttataagaatgattattaaagacatgaaa
cttggctttagccaacaaactgtgttttccatctttcaccgtgatgctgcagaacttcac
aatgtcaccacagatcttgagaaagtgtgtgttcaattacatgaccccagtgtatgtcta
agtgatgtgtccatctctatattttctgctttcaaacccatgcttgctgctattgccaat
attcaacgaatagaaaaacagatgaaccaccagagtttttacattgaaactaagcttgat
ggggagagaatgcagttgcacaaagatggtgacgtgtacaaatacttttcccgaaatgga
tttgattacactcaacagtttggtgggtctccccttgaaggttccttaacaccatttatt
cataacgtattttgtagggatttacagaactgcattttggacggagagatgatggcttac
aatccaaatacaaaggcatttatgcaaaaagggaacaaatttgatataaagagaatggta
gatgattctgatctccaaacttgttactgtgtgtttgatatcttgatgtttaataaccag
aaattagctcatgaaacactgagaaaaaggtatgatatccttcatgaaatattcactcca
attactgggagaattcacattgttcagaaaaaagaagctaccaccagaaaagaggttgtg
gatgcactaaatgaagccattgataatcgtgaagaaggtataatggtaaaagatcctatg
tccatttataaaccagataaacgtggggaggggtggctgaagatcaaaccagaatatgtt
aatggactaatggatgagttagatcttctaattgttggaggttactggggcaagggccag
cgaggtggcatgatgtctcatttcttatgtgctgtagctgaaaccccagtacctggagac
aagccatctgtttttcattctgtgtgtcgcataggctctggctacaccatgaaagagtta
tatgaccttggtataaagttggctccacactggaaggtttaccgcaagagagatcctcct
tctgatattctgtgtggaattgagaagcctgaggtttatatccaaccttgtaactctgtc
attattcaggtaaaggctgctgaaattgttcccagtgatatgtacaaaactaactgtact
ctccgttttcctcgaattgagaagatcagagaggacaaggattggtatgactgtatgact
gttgatgacttggaacaatttcgagaaaaggcttctggaaaattggcttcaaagcactta
gatgtaaatgatgaacctcaggagaaaaagcggaaaaaagcccctaaaattaggaaggtt
ataggagtggtttcacatctaaaggcaccagatttgtctaacatcacaaaacagtccaat
atgtttgaagacgttgaattttgcgtaatgagcggaacagaagaacattcaaaggctgac
cttgagagcatgatcgctgcatgcgatggcatagttgtgcaaaatcctgggcaagacacc
tattgtatcattgctggagctataaacattcgagtaaagaacataatttcatcagataag
catgatgttgttagagcagcctggcttcttgagtgttttgaaagcaaggagattgtccct
tggcagcctcagcatatgattcatatgtgtccatccaccaaagagcactttgcctctgaa
tatgactgctacggtgacagctatatcacagatactaatgagagcgagctgaaggacctg
tttagcagaatgcctgacaccaaggaaaaaattcctctagacatgattgctgacctagaa
caacgttattcatgggaggagactttccacagtatatttcgccaatgtgttgcatacata
gacatgtttacaactattaatgatccagacactaaaattccaacttctagtttaaatata
actgcattacagctgcgatttcatggagccaaagtggtgaattgccttcaagaaggagtt
tctcatgtaattgtaggtgatgacaagtctcgattaacagagataaaaattcagaggaga
acatttcaaagaaaatttaaaattgtttcagcttcatgggttttggattcactaaaattg
gggaaattccagatggaacaaaattatttattgtaa
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