Aquarana catesbeiana (American bullfrog): 141139973
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Entry
141139973 CDS
T11018
Symbol
KDM2B
Name
(RefSeq) lysine-specific demethylase 2B isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
acat Aquarana catesbeiana (American bullfrog)
Pathway
acat03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
acat00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
141139973 (KDM2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
acat03000
]
141139973 (KDM2B)
04121 Ubiquitin system [BR:
acat04121
]
141139973 (KDM2B)
03036 Chromosome and associated proteins [BR:
acat03036
]
141139973 (KDM2B)
Enzymes [BR:
acat01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
141139973 (KDM2B)
Transcription factors [BR:
acat03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
141139973 (KDM2B)
Ubiquitin system [BR:
acat04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
141139973 (KDM2B)
Chromosome and associated proteins [BR:
acat03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
141139973 (KDM2B)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
141139973 (KDM2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
F-box
JHD
Cupin_8
JmjC
LRR_At1g61320_AtMIF1
LRR_4
Motif
Other DBs
NCBI-GeneID:
141139973
NCBI-ProteinID:
XP_073482746
LinkDB
All DBs
Position
LG01:complement(241521927..241731045)
Genome browser
AA seq
1259 aa
AA seq
DB search
MEAKKGSGRRLRAISRTQYAEHEDLSDVEDVVSVRGFNLEQKVSSTNYRGDYVQVMEGKD
FTYEYVQREALRVPLLFLSKDGLGIKMPDQDFTVRDVKLLVGSRRIVDVMDVNTQKGTDM
SMSQFVRYYETPETEREKLYNVISLEFSHTKLEKVVKRPTVVDTVDWVDNMWPQHLKVKQ
KEATNVLSVMKYPKVKKYCLMSVKGCFTDFHIDFGGTSVWYHVFRGGKVFWLIPPTVYNL
QLYEEWLLSGKQTDIFLGDRSQGCQRIELKQGHTFFIPSGWIHAVYTPADSLVFGGNILH
SFNIPMQLRVFEIEDRTRVHAKFRYPFYYEMCWYVLERYVCTLTNRCYLNKEYQKESMLF
ESTGRPSIDSLSSDSWLEMEEESCDAHTLDEKDDHGEKISKLSGDESLTPNSTQSDGKES
AEKKQKATLMHYLKRTLSNDSDESSRSVVHSDFPKTPSESPSTEVTSRWTHLTEFELKGL
KALVEKLESLPENKKCVPDGIENPHALLEDMKTVLKEHADDDQNLAISGVPVVSWPKKPA
KNRAVGRPKGKLATSPAVKLSTNRTNAGARRRRTRCRKCEACLRTECGECHFCKDMKKFG
GPGRMKQSCIMRQCIAPVLPHTAVCLVCGEAGKEDCVEGQEAKFNVMLMECSICNEIIHP
GCLKIKESDGVVNDELPNCWECPKCNHAGKTGKVYKQKRGPGFKYASNLPGSLLKEQKMN
RDNKELTELVKKKEREETPRQNLEEQPKKKVLEGIVKRKPEDGPFKRKRPLEKTSDPAVR
KRLKLVKEDKLFKKKKRTWKTPEERALMAKTKRIKQEPDDDMGESVPKSKESDQSRSSSP
TAGPSTEGPESKEKKKIRRKRKVSNKELSKELSKELNQEIQKTENSLANENHHPIKSEPE
SEDEEPKKCVNTNGERMHRFSKELNGTPKEFKHQSLPSPRTMPRVTNRPPPSLSPPKCVQ
MERHVIRPPPISPPPDSLPLENGATHVMQREVWMAIFSYLSHKDLCICMRVCKTWNRWCC
DKRLWTRIDLNHCKSITPLMLSGIIRRQPVSLDLSWTNISKKQLSWLMNRLPALRDLNLS
GCSWIAVSALCSSSCPLLRLLNVQWVEGLKDAQMRDLLSPPTDNRPGQIDNRSKLRNITE
LRLAGLDITDATLRLMIRHMPLLSKLDLSYCNHVTDQSINLLTAVGTSTRDSLSEINLSD
CNNVTDQCLTYFKRCGNICLIDLRYCKQVTKESCEQFIAEMSVIVQFGQTEEKLLQKIS
NT seq
3780 nt
NT seq
+upstream
nt +downstream
nt
atggaggcaaagaaaggctctggaagaagattgcgtgccatcagtcggacgcagtacgcc
gagcatgaagacctatcggatgtggaggatgtggtcagtgttcgcggcttcaacctggag
cagaaggtcagcagcaccaactaccgaggggactacgtgcaggtcatggagggcaaagac
tttacatatgaatatgttcaaagagaagcccttagagttcctcttctttttctcagcaag
gatgggctaggtattaagatgccagatcaggattttactgtcagggatgtgaaactacta
gtcggaagccggcgtatagttgatgtgatggatgtgaatacacaaaagggtacagacatg
agtatgtcacagtttgttcgctactatgagacaccagaaactgaaagggagaagctgtac
aatgtgatcagcctggagtttagccacaccaagctagaaaaagtagtcaagaggccaact
gtggtagacacagttgactgggtagataacatgtggcctcaacatttaaaggtgaaacaa
aaagaagcaactaatgtcttgtctgtaatgaagtatcccaaagttaaaaagtattgtttg
atgagcgtcaaaggttgtttcactgatttccatattgactttggagggacatccgtatgg
taccatgtttttcgaggtggaaaggtattttggttgattcctcccactgtgtataacttg
cagctttatgaggaatggcttttatcagggaaacaaactgatatattcttaggagacaga
tcacagggttgtcagaggattgaactgaagcaaggacacaccttctttatcccatcagga
tggattcacgccgtgtacactccagcagactctttggtgtttggtggcaacatactgcac
agctttaatattcccatgcaacttcgtgtgtttgagattgaagacagaacaagggtgcat
gccaaattccgctatcctttctattatgaaatgtgttggtatgtcctggagagatatgtt
tgcactttaaccaaccgctgttaccttaacaaggagtatcagaaggaatcaatgctattt
gaatcaacaggaaggcccagtatagacagcttgtcctcagattcttggttagaaatggag
gaagaatcctgtgatgctcatacgctggatgagaaagatgatcatggagaaaagatatcc
aagttatctggggatgaatccttgacacctaatagtacacagtctgatggcaaagagtca
gcagaaaagaaacaaaaggctacattaatgcactatttaaaaaggactttatctaatgac
tctgatgaaagctccaggtctgttgtgcacagtgacttcccaaaaaccccatcagaatct
ccatctacagaggtgacttccagatggacacacctcacagagtttgaactaaagggcttg
aaagccctcgtggagaaactagaatctcttcctgaaaataagaaatgtgttccagatgga
atagaaaatccacacgctcttctggaagatatgaagactgtactcaaggaacacgcagat
gatgaccagaatctggccatttctggagtacctgtcgtgtcttggcccaagaaacctgcc
aagaaccgggcagtaggaagaccaaaagggaaacttgccacctctcctgcagttaaatta
tctactaacaggaccaacgctggtgcccgtcgaagacggacgcggtgtcgcaagtgtgaa
gcatgtttacgtacagagtgtggagaatgccacttctgcaaagacatgaagaagtttggt
ggcccagggaggatgaaacagtcatgtataatgcggcagtgcatagctcctgttttgcct
catacagctgtctgtttagtatgtggagaagcaggaaaggaggactgtgtggaaggccag
gaagcaaaatttaatgtcatgttgatggaatgctccatctgcaatgaaataatccatcca
ggatgccttaagataaaggaatctgatggtgtggtgaatgatgaacttccaaactgctgg
gaatgtccaaaatgcaaccatgctgggaaaactgggaaagtctacaagcaaaaaagaggt
ccaggatttaagtatgcttccaacctgcctgggtccttgcttaaggagcagaagatgaat
cgagataataaagagctaacagaacttgtaaagaagaaagaaagagaggaaacccccagg
cagaatttggaagaacagcccaaaaagaaggtcttggagggaattgtaaaacgaaaacct
gaggatggcccctttaagaggaaacggccactggaaaaaacttctgaccctgcagtcagg
aagaggttaaaactagttaaagaagacaagctcttcaagaaaaagaagagaacctggaag
acaccggaagaacgagcacttatggccaaaacaaagcgcattaaacaggagccagatgac
gatatgggagaatctgtccccaaatctaaggagagtgaccagtccagatcgagttcaccc
actgctggtcccagcacagagggtccagagtctaaggaaaagaagaaaatcagaaggaaa
agaaaagtctctaataaggaactaagcaaagaattaagcaaggagctaaaccaagagatc
cagaaaacagaaaatagcctggccaatgagaaccatcatcctattaaatctgagccagag
agtgaggacgaggagcccaagaaatgtgtgaacaccaatggggagcgtatgcatcggttc
agcaaagaactgaatgggaccccaaaggagtttaagcaccagtctcttccaagtccaagg
acaatgccaagggtcaccaatcgccctcctccatctttgtcacctcccaaatgtgtgcag
atggaacgccatgtaataaggcctcctccaatcagccctcctccagactctctacccctg
gagaatggtgcaacccatgtgatgcagagagaggtttggatggccatctttagctacctc
agccacaaagatctgtgcatctgtatgagagtctgcaaaacgtggaatagatggtgctgt
gataaaagattgtggacgcgaattgatttaaaccactgtaaatccataactcctcttatg
ctcagtgggatcatcaggagacagcctgtgtccttagatttaagctggacgaatatatca
aagaaacaactaagctggctcatgaaccggcttccagctctaagggatctgaatttatca
ggctgttcttggattgccgtatctgcactttgtagttccagctgtccattgctgagattg
ctcaatgttcaatgggtagaaggactgaaagatgcacaaatgagggatctcttgtctcct
ccaaccgataacagaccaggtcagatagacaaccgtagcaaattgaggaacatcacagag
cttcgtctagcaggactggacattacagatgccacactgcgcctgatgattcgacacatg
cctcttctttccaagctggacctgagttactgtaaccacgtgactgatcagtccattaac
ctgctcactgcagtgggtacatctaccagggattctctgtcagaaattaatttatcagac
tgcaataatgttacagaccagtgcctgacttactttaaacgctgtggcaacatctgtctg
attgacctcaggtactgcaagcaggtcaccaaggaaagctgcgaacagttcattgccgaa
atgtcagtaattgtacagtttggacaaacagaagaaaagcttcttcaaaagattagctaa
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