Acinetobacter pittii: BDGL_000070
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Entry
BDGL_000070 CDS
T01684
Symbol
ligA
Name
(RefSeq) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
acc
Acinetobacter pittii
Pathway
acc03030
DNA replication
acc03410
Base excision repair
acc03420
Nucleotide excision repair
acc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
acc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BDGL_000070 (ligA)
03410 Base excision repair
BDGL_000070 (ligA)
03420 Nucleotide excision repair
BDGL_000070 (ligA)
03430 Mismatch repair
BDGL_000070 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
acc03032
]
BDGL_000070 (ligA)
03400 DNA repair and recombination proteins [BR:
acc03400
]
BDGL_000070 (ligA)
Enzymes [BR:
acc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BDGL_000070 (ligA)
DNA replication proteins [BR:
acc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BDGL_000070 (ligA)
DNA repair and recombination proteins [BR:
acc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BDGL_000070 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BDGL_000070 (ligA)
MMR (mismatch excision repair)
DNA ligase
BDGL_000070 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BDGL_000070 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH
FmiP_Thoc5
5_3_exonuc
DUF724
ZapB
Motif
Other DBs
NCBI-GeneID:
11637223
NCBI-ProteinID:
YP_004994338
UniProt:
F0KEX6
LinkDB
All DBs
Position
78654..80693
Genome browser
AA seq
679 aa
AA seq
DB search
MATTSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPDLVQSDSP
TTKVGGQALSKFQSVTHVVPMLSLGNVFNQEDLFAFARRVEERLPNQKVQYEVELKLDGL
AISLWYENGLLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSDHFEIPHLLEVRGEVLMP
KSGFEKLNAEQEAKGDKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCEPNHGLT
TMHDSLQWLTKLGFEIAERQYLCNSIQEVQQRYEQIQQERSDLQVEIDGMVVKVDDLKQQ
QQLGFLSREPRWATAYKFPAQAALTTVDQIDWQVGRTGTLTPVARLNPVFVGGVTVSNVT
LHNIGEIHRLDVRVGDTVSVYRTGDVIPKVEKVWPEFRPVDAEIVHLPENCPVCASPVVM
PEGEALARCSGGLYCAAQRIEAIRHFVSRKALDIEGLGDRWVESLLHLDLLKDVADIYHL
HEHRETLLGIEKMGEKSVQNLIDAIEASKKTTLARFIYALGIRGVGETTARMLANTFQTL
EALKAADVEALKKTPDVGDITAEWIADFFLAPHNIEVLDRLIAAGIHWDAPTAPTRQPLN
GESWVLTGTLEQMTRDQATQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIAV
MNETDFLSLMASYGQTLSE
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atggcaacaacttccgtgatcgaacagatgcgtcagcttattcaactgattgcaaagcat
aaccatgcctactatgtcatggatcagccgacaatctcggacagtgaatatgatcattta
tttcaccagttaaaagctttagaagagcaatatcctgatcttgttcaatcagattcacca
actacaaaagtagggggacaagcactctctaaatttcaaagtgtgactcatgtagttccg
atgctttctttggggaacgtttttaatcaagaagacttgtttgcatttgcacgtcgtgtt
gaagagcgtttacctaatcaaaaagtacaatacgaagtcgaactaaaacttgatggtctt
gcgatttctctctggtatgaaaatggcctattagtacgtggcgttacacggggtgacgga
gaaactggggaggacattacccagaacgttaaaacgattcgtaatttgcctaaagtgtta
cattcagatcactttgaaattccacatttgctggaagttcgtggtgaagtacttatgcca
aagtccggttttgaaaaactcaatgccgaacaggaagccaaaggcgataaaacatttgca
aatccgcgtaatgctgcagctggtagtttaagacaactcgatcctaatattgctgcggct
cgacctttagcattttatgcttacggcatcgcgcaatgtgaacctaatcatggcttaact
accatgcatgacagcctgcaatggctcacaaaacttggatttgaaattgctgaacgtcaa
tatctgtgtaattcaattcaagaagtacagcaacgttatgagcaaattcagcaagaacgt
tcagatttacaagttgaaattgatgggatggttgtaaaggttgatgacttaaagcaacag
cagcaacttggttttttaagtcgtgaaccacgttgggcaactgcttataaattccctgcc
caagctgcattaactacggttgatcagattgactggcaagtaggacgtacaggtactttg
accccagtagcgcgtttaaaccctgtatttgtggggggagttacggtttccaatgtaact
ttacacaacattggtgagatccatcgcctagatgtacgtgttggtgacacggtgagtgtt
tatcgtacaggcgatgttattcctaaagtagaaaaagtctggccagagttccgtcctgtt
gatgccgaaattgtacatttacctgaaaactgtcctgtttgtgcttcaccagttgtaatg
cctgaaggggaagctttagcacgttgttctggtggattgtattgtgctgcacagcgtatt
gaagcgattcgtcacttcgtatcacgtaaagctctagatattgaaggtctaggcgatcgt
tgggtagagtctttattacacctcgatttgctcaaagatgttgccgatatttaccatttg
catgagcaccgagaaactttgctcgggattgaaaaaatgggtgagaaatcggtacaaaat
ctgattgatgccattgaagccagtaagaagacaacgcttgcgcgttttatttatgcttta
ggaatacgtggggtaggcgaaaccacagctagaatgttagccaatacttttcaaacttta
gaagcgcttaaagctgctgatgttgaagctttaaagaaaacgccagatgttggtgatatt
actgccgagtggattgctgactttttcttggcaccgcacaacattgaagtgcttgatcgc
ttaattgccgcaggaattcattgggatgcaccgactgcaccaacacgccagccattaaat
ggtgaaagctgggtgttaacgggcacattagagcaaatgacccgtgatcaggcaactcaa
atgctacaagcattaggtgcgcgtgtaagcggtagtgtatcgagtaaaaccaaatgtgtt
gttgcgggtgagaaggctggttcgaaattagaaaaagcagcaaaactaggtattgctgtt
atgaatgagactgatttcttatcacttatggcgagctacgggcagactttaagcgaatag
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integrated database retrieval system
