Aerococcus christensenii: AWM71_02875
Help
Entry
AWM71_02875 CDS
T04262
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
acg
Aerococcus christensenii
Pathway
acg03030
DNA replication
acg03410
Base excision repair
acg03420
Nucleotide excision repair
acg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
acg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AWM71_02875 (ligA)
03410 Base excision repair
AWM71_02875 (ligA)
03420 Nucleotide excision repair
AWM71_02875 (ligA)
03430 Mismatch repair
AWM71_02875 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
acg03032
]
AWM71_02875 (ligA)
03400 DNA repair and recombination proteins [BR:
acg03400
]
AWM71_02875 (ligA)
Enzymes [BR:
acg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AWM71_02875 (ligA)
DNA replication proteins [BR:
acg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AWM71_02875 (ligA)
DNA repair and recombination proteins [BR:
acg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AWM71_02875 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AWM71_02875 (ligA)
MMR (mismatch excision repair)
DNA ligase
AWM71_02875 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AWM71_02875 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
DNA_pol_lambd_f
HHH
Nlig-Ia
DUF4431
K-box
Motif
Other DBs
NCBI-ProteinID:
AMB93212
LinkDB
All DBs
Position
complement(601947..603938)
Genome browser
AA seq
663 aa
AA seq
DB search
MKELVRELNQYAKEYYVWDQPSVTDAEYDQKYRQLEQLEATYPEEVQSDSPTQRVGDVLD
TQLEKVVFDRPMLSLGDVFSRKELEDWLDNVEDQLDEQCAYVCELKIDGLSVSLQYERGR
LVRAATRGDGHMGEDITHNVKTIPSVPLHLQEPLSLEVRGEIYMPKEAFVRLNQEREEKG
LATFANPRNSAAGSIRQLDPKVTAKRKLNVFLYTGVLGEELGIKSQLDLLTQYPKWGFRV
NPLYRLCQTKEEIWQFIEEIQNKRHQLDYDIDGIVVKVNRFNDQETLGYTVKVPKWAIAY
KFPAEQVQTTLKEIEWTVGRTGVVTPTAVMEPVLLAGSMVQRASLHNMDLIEAKDIRLND
QVMIHKAGDIIPEVVKVLPDYRTKDSKPYTKPIHCPTCQSLLVHLEEEVALRCINPSCPA
QAKERLNHFVSRQAMNISGVGPKLMEQLYDQGLVTTPSDLYHLEEDQLMSLNKIQEKKAH
KVVEAIEASKKNSLERLLFGLGIRHVGSKAARDVARYLGEMSDIQAADKETLAQIEGIGE
IIADSLVTYFANPSVQHLLQEFKQDGLNMTYLGASSEEIAAVASYFQGKTVVLTGKLEHY
TRQEAKQRIESQGGKVTGSVSAHTDVVVSGKEAGSKLTKAQHLGIPILNESETIQYLEGS
LPS
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgaaagagctcgtccgagagttaaatcagtatgcgaaagaatattatgtgtgggatcaa
ccgagtgtgaccgatgcagaatatgaccaaaaatatcgccaattagaacagctagaggcc
acttatcctgaagaagttcaatcagattctccaactcaacgtgtaggagatgtcttggat
acccaattagagaaagtcgtttttgatcgaccgatgctttctttaggagacgtatttagt
cgtaaagaattggaagactggctagataatgtcgaagatcaattagacgagcagtgcgcc
tatgtgtgtgaactcaagattgacggcttgtcggtctctcttcaatatgaaaggggacgt
ttagttcgggcggctactcggggagacggccatatgggagaagacattacccataacgtt
aaaactattccttctgttcccttgcacttacaagagccgctttcgcttgaagtgcgcgga
gaaatttatatgcctaaagaggcctttgtgcggttaaatcaagaaagagaagaaaagggc
ttggctacctttgctaacccaagaaattcagctgcaggaagtattcggcaactagatcct
aaggtaacggcgaaaaggaagttaaatgtttttctttatacaggcgtgttaggagaagag
ttagggattaaaagtcagttagatttgcttactcaatatcccaagtggggctttagggta
aatcctctctatcgtttatgccaaacgaaggaagaaatttggcaatttattgaagaaatc
caaaacaaacgccaccaacttgattacgatatcgatggcattgttgtgaaagttaatcga
tttaatgatcaagaaaccctaggttatacggtaaaagtgcctaaatgggccatcgcttat
aaatttccagctgaacaagttcaaacgacattgaaagaaattgaatggacagtgggaaga
acaggtgttgtgactccgacagcagtcatggaacctgttttattagcgggatctatggtt
caacgtgcctctttacataatatggatctgattgaagccaaagatattcgcctcaatgat
caagtgatgatccataaagcgggcgatattattcctgaagtggttaaagttttaccggat
tatcgaacgaaagactctaagccttatactaaacctatccattgcccgacttgtcagagt
cttttggtccatttggaagaagaggtcgctttacggtgtataaatccttcttgtccggcg
caagccaaagagcgattgaatcattttgtgtctaggcaagctatgaatatttcaggggtt
gggccaaaattgatggaacaattgtatgaccaaggtttggtgaccacgccaagtgacctc
taccatttagaagaggatcaattgatgtctttaaataagatccaagaaaagaaggctcat
aaggtggtagaagccattgaagccagcaagaagaattcgttggaacgcttgttgtttgga
ttagggattcggcatgtaggaagtaaagctgcgagggatgttgccagatatttgggcgaa
atgtcagacattcaagctgctgataaggaaactttggcccaaatagagggaattggtgag
attattgcagatagcttggtgacttatttcgccaatccttcggttcaacatcttttacaa
gagttcaaacaagacggcttgaatatgacttacttaggagcctcttctgaggaaattgcg
gcggtggcttcttatttccaagggaaaacggtagtgttaactgggaagttggaacactac
acgcgtcaagaggctaagcaacgcatcgaaagccaaggaggaaaagtgacgggatcggtt
tcagcacacacagatgttgtagtaagtgggaaagaagcaggtagcaaattaaccaaggcc
cagcatcttggcatccctattcttaatgaatccgagacgattcagtacttagaagggtct
cttccttcttaa
DBGET
integrated database retrieval system
