Achromobacter sp. ES-001: KYT87_06280
Help
Entry
KYT87_06280 CDS
T10529
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
acha Achromobacter sp. ES-001
Pathway
acha03030
DNA replication
acha03410
Base excision repair
acha03420
Nucleotide excision repair
acha03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
acha00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KYT87_06280 (ligA)
03410 Base excision repair
KYT87_06280 (ligA)
03420 Nucleotide excision repair
KYT87_06280 (ligA)
03430 Mismatch repair
KYT87_06280 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
acha03032
]
KYT87_06280 (ligA)
03400 DNA repair and recombination proteins [BR:
acha03400
]
KYT87_06280 (ligA)
Enzymes [BR:
acha01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KYT87_06280 (ligA)
DNA replication proteins [BR:
acha03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KYT87_06280 (ligA)
DNA repair and recombination proteins [BR:
acha03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KYT87_06280 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KYT87_06280 (ligA)
MMR (mismatch excision repair)
DNA ligase
KYT87_06280 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KYT87_06280 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
QYJ22840
LinkDB
All DBs
Position
1412807..1414909
Genome browser
AA seq
700 aa
AA seq
DB search
MSRASGEVNPAETAARLRAELEQHNVRYYVYDEPSVSDAEYDGLMRQLEALEAEHPELIT
PESPTQRVGAAPVSAFGSVRHAVPMLSLNNAFAEEEVVAFDRRVTDTLRGAGLLGPAQQA
DYFCELKLDGLAISLRYEDGRLVQAATRGDGQTGEDVTSNIRTIKAIPLQLKGSAPKVLE
VRGEVLMNRADFEKLNAAQAKRDEKIFVNPRNAAAGSLRQLDPRITAKRPLRFFAYGWGE
VQGLPGKQSGLFDEATAGAGQASQLPEASHGAMLAWLHELGLPVNLKHNHRATGAEGLMA
FYAKVGELRASLPYDIDGVVYKVDSLPAQKVLGFVARAPRFALAHKFAAEEATTTLLDIE
VQVGRTGAITPVARLKPVFVGGVTVTNATLHNEDEIRRKDVRKGDTVIVRRAGDVIPEVL
GPVLEKRPDDAQEFVMPTACPVCGSAIERLEDETIARCTGGLFCAAQRKQTLWHAASRKA
LDIEGLGEKLVDQLVDSGRVKTLADLYSLRPLELVGLDRMGQKSADNLVAAIDKARAPGL
NRLLFALGIRHVGETTARDVARHFGSIDAIMDADEDALSSVPDVGPVVAASIRRFFAEQH
NRDVIEQLKVQGVNPVADAAPQGTTLAGKTFVLTGTLPNWTREEASMHIQAAGGKVSGSV
SKKTAYLVAGEEAGSKLTKAQELGVTVLDEDALKALLGMS
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcgcgtctggtgaagtcaacccggcggaaaccgcggcgcgcctgcgcgccgag
ctggaacagcacaacgtccgctattacgtctacgacgagccctccgtctcggatgccgag
tacgacgggctgatgcggcagcttgaagccctagaggccgagcatcccgaattgatcacc
ccggaatcgcccacgcaacgcgtgggcgcggcgcctgtctccgcctttggcagcgtgcgc
catgccgtgccgatgctgtcgctgaacaacgcctttgccgaagaagaagtggtggcgttc
gaccgccgtgtcacggacacgttgcgcggcgcgggcctgctggggccggcgcagcaagcc
gattatttctgtgagctcaagttggacgggctggcgatcagcctgcgttacgaggacggc
cgtctggtgcaggccgccacgcgcggcgacggccagacgggcgaagatgtcacctccaac
atccgcaccatcaaggccattccgctacaactgaaagggtccgccccgaaagtgctggaa
gtgcgcggcgaggtgctgatgaatcgcgccgactttgaaaagttgaacgcggcgcaggcc
aagcgtgacgaaaagatcttcgtcaacccgcgtaatgccgccgccggcagcctgcgtcag
ctggacccgcgcatcaccgccaagcggccgctgcgcttctttgcgtatggctggggcgaa
gtgcagggcctgcccggcaagcaaagcggcttgttcgacgaggccacggccggcgccggt
caggcctcgcaactgcccgaagcgtcgcatggcgccatgctggcgtggctgcacgagctg
ggcctgccggtcaacttgaagcacaaccatcgcgcgacgggcgccgaaggcttgatggcc
ttttatgccaaggtgggcgagctgcgtgccagcctgccttacgacatcgacggcgtggtc
tacaaagtagattcgctgcccgcgcagaaagtgctgggcttcgtggcgcgcgcgccgcgc
ttcgcgctggcgcacaaatttgccgccgaagaagccaccaccacgctgctggatattgaa
gtccaggttgggcgcacgggcgcgatcacgcccgtggcacgcctgaagcccgtgttcgtg
ggcggcgtgaccgtcaccaacgcgacgctgcacaacgaagacgaaatccgccgcaaggac
gtgcgcaagggtgacaccgtcatcgtgcgccgcgcgggcgatgtgatccccgaagtgctg
ggccccgtccttgaaaagcggcccgacgacgcccaggaattcgtcatgcccacggcctgc
ccggtctgcggctcggccattgaacggctggaagacgagaccattgcgcgctgtacgggc
ggcctgttctgcgccgcgcagcgcaagcagacgctgtggcatgcggccagccgcaaggcg
ctggacatcgaagggctgggcgaaaagttggtggaccagttggtcgacagtggccgggtc
aagactttggccgatctgtacagcctgcgcccgctggagctggtgggcctggatcgcatg
ggccagaagtcggccgataacctggtggcggccatcgacaaagcgcgcgccccgggcttg
aaccgcctgttgtttgcgctgggtattcgtcacgtgggtgaaaccaccgcgcgcgacgtg
gcacggcatttcggcagcatcgacgccatcatggacgccgatgaagacgctttgtcgtca
gtgcccgacgtgggccccgtggtggcggcatccatccgccgcttctttgccgagcagcac
aaccgggacgtcatcgagcaattgaaggtgcagggggtgaaccccgtggccgacgccgcg
ccgcaaggcacgacgctggcgggcaagactttcgtgttaaccggcaccctgcccaactgg
acgcgcgaggaagcatcgatgcacatccaggccgcgggcggcaaggtcagcggctcggtc
tccaagaaaaccgcttatctggtggccggcgaagaggccggcagcaaactgaccaaggcg
caggaactgggcgtgaccgtgttggatgaagatgcgttgaaagcgctattggggatgtcc
tag
DBGET
integrated database retrieval system
