Aquila chrysaetos chrysaetos (golden eagle): 115340151
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Entry
115340151 CDS
T08023
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1 isoform X1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
achc
Aquila chrysaetos chrysaetos (golden eagle)
Brite
KEGG Orthology (KO) [BR:
achc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
achc03036
]
115340151 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
achc03400
]
115340151 (SMCHD1)
Chromosome and associated proteins [BR:
achc03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
115340151 (SMCHD1)
DNA repair and recombination proteins [BR:
achc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
115340151 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
SMC_hinge
HATPase_c_3
HATPase_c
Big_1
Motif
Other DBs
NCBI-GeneID:
115340151
NCBI-ProteinID:
XP_029867076
Ensembl:
ENSACCG00020007610
LinkDB
All DBs
Position
4:54001855..54092308
Genome browser
AA seq
2079 aa
AA seq
DB search
MAAAVGGSRGARRPVLLTPRGSGDRTVFLFDRRREQADLDEKVLSYGKDNYRGFRSAVCQ
VSLCGRWLLCLCYPLATSPSSEASSSHHSHVSACWNSYHRRRQSILKAFGIATDENFVIT
TTNRKEITEDNFSELVQDGVTLYLLQSVDQMLLSATKERIDFLPHYDTLVKSGMYEYYAS
EGQNPLPFALAELIDNSLSATSRNTGIRSIQIKLLFDDSQGKPAVAVIDNGRGMTSKQLN
NWAVYRLSKFTRQGDFESDHSGYVRPLPVPRSLNSDISYFGVGGKQAVFFVGQSARMISK
PADSQDVHELVLSKEDFEKKEKNKEAIYSGYIRNRKPSDSTHITSDDERFLRNLILEERD
KESFTAVVITGVQPDHMQYLKNFFHLWTRQLAHIYHYYIHGPKGNETNAVTKDISPFNNI
DIQISMFEKGKVPKIVNLREIKDDMQTLYINTAADSFEFKAHVEGEGIVEGIIRYHPFLY
DKETYPDDPCFPSKLNDDDDDEDCFIVEKGARGKRPIFECFWNGRLIPYTTVEDFEWCAP
PKKRGLAPIECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNTLFTRIFNGQEQRMK
IDREFALWLKDCHEKYDKQIKFTVFKGITTRTDLPSKRMQSPWTMYAAIEWDGKTYKTGQ
LVKTVKTLPIFYGSIEKFFLYGDHDGDIFATGGEVQIALEPQALYAEMKTVPISKLDRTV
SDKAVKKYIEDEMARLPDKLSVTWPEGDELLPNETRFAGTPIGALRIEILNKKGEAMQKL
PGTSHGGSKKLLVELKVILHSPTGNKEIISHISQHGGKWPYWFKKMENLQKLGNYTLKLQ
VVLNESNADTYAGRPLPSKTFKFTIIEGKPEKFSVGLLELPFRVGVPFNIPLELQDEFGH
ATQLTTAMKPILEASGLSLQYGEVTAGTKCIIKGVTAKGCINSCQGKNFNLKVTLPGLKE
DTQIFKIRLQPGPPHQLKVKPDSEILKIENGTAFPFQVEVLDESGNITAQPKLIVHCKFL
GASNLPVYSVDCSNAGTNILTGPVIHVQNIKKDQLLKARIEILSCKDVPPVEKIIKLLPS
SHVARLQILSMDGQKAIQIKHQDEINWVAGDVMHNLIFQMYDEGEREIHITPAMAEKIKV
NWTPRINREQLIQGLLPDVKVPTSVKDVRYCLITYLDDHVSLESAFTVRPLPDEPKHIKC
KLKGPNTLQMGEELQSEIDIMITDQYGNQVQTVTSACLNSLGVSGPGLDKSNLKITWQES
TLTMRVKGIRFKPCLLGSKELCFAWREFSDFLRVNLTAGSPAKLQFVDWPELEKPVAVIN
GRELQKPLIVQLCDQWGNPSPEPNVKISLIKGNNLKIVPSNQQLKTDENGRANLGVISIH
APRGEHTLQLKALHNKTTLDCPIITLNVLPDPEKPVCLNVKYDKNASFPAGGTFPDFMVS
VLSEDENIIKNINPARISMKMWEAQSSGTRIPVDVTTFSCSKVKDDKEDGFFYFRDKVVP
ERVGTYSIQFTFAMDKTNMLSSDQIIVEVVPNDPVRLLPDSLPATPAVSNVRTLTSRTLV
KDLYLHVMDEYNNRTGIDLVGRIIAKIKSPSEDDTEIPQFQGKVSTIEFPFDRGSAEINL
VLAENSPGRDSTEYILVFEPDLPALKKPLEPYCLSFMFYNDFKKQQQMATLTRERDQLSQ
SIGVYRNWFDTTNQLVTEIKCQVKEAETRETHLKNELRKHQIELPQTNTLQYVDSLIKQK
VLDQERVMKQPRRTCTLPNYPKGSQDILGKIAHLAQIEDNEAAKVISWHLASDMDCVVTL
TTEAARSIFDETQGRQQVLPLDSIYKKTLPDWNRPLPHLRNGKIFFRPIGNPVFARDLLT
FPDNVEHCQTVFGMLLGDTIIIDNLDAANHYRKEVVKITHCPTLLTREGDRIRSNGKFGG
LQNKAPPMDKLRGMVFGAPMPKLYSTFSGQIDLLQQYRAAVVKLDNVNKDLDLHLQSLNT
PEMQKKKQELAEQEKSLKLIEQKLGMTPSDKVTESLLQPHHMLDMSDTPIPPKRMRRETV
KKLYSSEEWISSPTKKQQQQQLLQISPSELNGTPRKRKA
NT seq
6240 nt
NT seq
+upstream
nt +downstream
nt
atggcagcggcggtgggaggcagccgcggagctcgcaggccggtgctgctgacgcctcgc
ggcagcggggaccgcaccgtctttctcttcgaccggcgccgggagcaggcggatctggac
gagaaagtgctcagctacggcaaggacaactaccgcggcttccgcagcgccgtctgccag
gtgtcactttgtggaaggtggctgttatgtctctgttatcccttggctacatcaccaagt
tctgaggccagttcttcacatcattctcatgtgtctgcctgctggaacagttaccatagg
aggagacagagcattttaaaggcatttggcatagctactgatgaaaactttgttatcacc
acaacaaacaggaaagaaattacagaagacaacttcagtgaacttgttcaagatggagtg
actttgtatctgctacagtcagttgatcaaatgctgctttcagcgacaaaggagcgaatt
gacttcctgccccactatgatacacttgtcaaaagtggcatgtacgagtactatgccagc
gaagggcaaaatcctttgccatttgcccttgctgagttgattgacaattctctgtcagct
acatcccgaaatactggtattcggagcatacagataaaactgttgtttgatgattcccaa
ggaaaaccagctgttgctgtgatcgataatggaagaggaatgacttctaaacagcttaac
aactgggctgtatacagattgtcaaagtttacaagacaaggtgacttcgagagtgatcat
tcaggatatgtacgccctttgccagtgcctcgtagtttaaatagtgatatctcatatttt
ggagttggaggcaaacaagcagtgttcttcgttggacagtctgccagaatgataagcaaa
cctgcagattctcaggatgttcatgaacttgtcctttctaaagaggattttgaaaagaag
gagaaaaacaaagaagcaatatatagcggatacattcgaaacagaaagccatctgactct
actcacatcacaagtgatgatgaaagatttcttcgtaatctaatattagaagaaagggat
aaagagagtttcacagcagttgtcattacaggtgtacaaccagatcatatgcagtacttg
aaaaacttttttcatctttggacaaggcagctggcacatatctatcactattacatccat
ggaccaaaaggaaatgaaactaatgctgtaacaaaagacataagccctttcaacaacatt
gacattcagatttcaatgtttgaaaaaggaaaagtaccaaagattgtcaatcttagggag
atcaaagatgacatgcagacattgtatataaatactgcagcagatagttttgagtttaag
gcacatgttgaaggagaaggtatagtggaaggcatcatccgatatcatcccttcctctat
gataaagaaacataccctgatgatccatgttttccatcaaaattaaacgatgatgacgat
gatgaagactgctttatagtagaaaagggtgccagaggaaaaaggcctatttttgaatgt
ttttggaatggaagattaataccatacacaactgtggaagattttgagtggtgtgctcct
ccaaagaagagaggattggcaccaattgaatgctacaacagaatttctggtgcattattt
accaatgataagttccaggtcagcacaaacaaactcactttcatggatctggagctgaag
ctaaaagataagaatactctgtttacaagaatcttcaatggacaggagcagcgaatgaaa
attgacagagaatttgctttgtggctcaaagactgtcatgaaaaatatgacaaacagata
aaattcacagtctttaaaggaataactacacgtactgatttaccatccaaaagaatgcag
agcccttggacaatgtatgctgcaatagagtgggatgggaaaacttacaaaactggacag
ctggtgaaaactgttaagactcttccaatattctatggaagtattgagaaattttttttg
tatggagaccatgatggggatatatttgccactggaggagaggttcaaattgctttggaa
cctcaggcattgtatgctgaaatgaaaactgttccaatctcaaaacttgacagaacggtg
tctgacaaagctgttaaaaaatacatagaggatgaaatggcaagacttcctgacaaatta
tcagtaacatggcctgaaggcgatgagttattaccaaatgaaacaagatttgctggtaca
ccaataggagcattaagaatagaaattttgaataaaaaaggagaagcaatgcaaaaactt
ccaggtacaagccacggaggttcgaagaaacttcttgttgaactcaaggttattttacat
tcacctactgggaataaagaaataatttcccatatcagtcagcatggaggcaaatggccg
tactggtttaaaaaaatggaaaatcttcagaaacttgggaactataccttgaaactgcaa
gtagtattgaatgaaagcaatgcagacacttatgcaggaaggcctctaccatctaaaaca
tttaaatttactattatagagggcaaaccagagaaattttcagttggtcttttggagctt
ccttttcgggttggagtaccttttaatattcctttggaattgcaggatgaatttggtcat
gcaacacagctgacaactgccatgaaaccaattcttgaagctagtggtttgtcattgcag
tatggagaagtaactgcaggaacaaagtgcatcattaagggtgtcactgctaaaggctgt
ataaatagttgccagggcaagaactttaatctgaaggttactcttcctggtttgaaagaa
gacacacaaatctttaaaataagattgcagcctggccctcctcatcaattgaaagtaaaa
ccagattctgaaattctaaagattgaaaatggtacagctttcccctttcaggttgaagta
ctggatgaatcaggaaatataacagcacagccaaagttgatagttcattgtaagttttta
ggtgcttcaaaccttcctgtgtattctgtggactgcagtaatgcaggaacaaacatttta
actggtccagttatacatgtacagaatatcaagaaagaccagttgctgaaagcaaggatt
gaaatacttagttgtaaagatgtgccaccagtggaaaagattattaaacttcttcctagc
agtcatgttgcaagactacagatcttaagtatggatggacaaaaagctattcaaattaaa
catcaggatgaaattaattgggttgctggcgatgtcatgcacaaccttatatttcagatg
tatgatgaaggagaaagggagatacacataactccagctatggcagaaaaaatcaaggtt
aactggacacctagaattaacagagaacagctgattcagggattattacctgatgtaaaa
gtaccaacgtcagtaaaagatgttcgttactgtctaattacttatcttgatgaccatgtg
tctttggagagtgcgttcacagtcagaccacttcctgatgaacccaaacacattaaatgt
aaattaaaaggaccaaacacactgcagatgggtgaagaactacaaagtgaaattgatata
atgattacagatcagtatggaaatcaggttcagacagtgacatctgcatgtctaaattcc
ctaggagtttctgggcctggacttgataaatccaatttgaaaataacttggcaggagagt
actctaacaatgagagtaaaaggtattcggtttaaaccttgtttacttggaagcaaagaa
ttgtgcttcgcttggcgtgaattttctgactttctcagagtaaatttaactgcaggatcc
cctgctaaattacagtttgtggattggccagagttagaaaagcctgttgcagtgattaat
ggtagagaattgcagaagccccttattgttcagctgtgtgatcagtggggaaatccatct
cctgaacctaatgtcaaaatcagccttataaagggtaacaacttaaagattgttccttca
aaccagcaacttaaaacagatgaaaatggtagggctaacctgggagttattagtattcat
gcacctaggggagagcacactttacagcttaaagccttacacaacaagaccacattagat
tgtcctataatcacattaaatgtcctgcctgatcctgagaaacctgtctgcttgaatgtt
aaatatgacaaaaatgcttcttttccagcaggaggtactttccctgattttatggttagt
gttctttctgaagatgaaaacattattaaaaatattaatccagcacggatttctatgaaa
atgtgggaagcacagagcagtggaactaggataccagttgatgttacaacatttagctgt
agtaaagtgaaggatgacaaagaagatggtttcttctacttcagggataaagtggttcca
gagagagtgggcacttacagtatccagtttacctttgcaatggataagacaaatatgctc
agcagtgaccagattatagttgaagttgtacctaatgaccctgtacgcttgttacctgat
tctttaccagctactccagcagtttccaatgttcgaactcttactagccgtacactggtc
aaggatttatacctccatgtaatggatgaatacaataaccgcactggaattgatctagtt
ggcagaataatagcaaaaattaagagccccagtgaagatgacacagagatcccacagttt
caggggaaagtcagtacaattgagtttccatttgacagaggatcagctgaaattaatcta
gtgctggctgaaaacagccctggaagagatagcactgaatatattcttgtatttgagcca
gatctgccagctttgaaaaaacctttggaaccatactgtctgtcatttatgttttacaat
gatttcaagaagcagcaacagatggcaacacttacaagggagagagaccaattatctcag
tccataggtgtttacagaaattggtttgatactactaatcagcttgtaactgaaattaaa
tgtcaggttaaagaagctgaaacaagagaaactcacctgaagaacgaactgagaaaacac
caaattgaattaccacagacaaacacacttcagtatgtggattctcttataaaacaaaag
gtgttggatcaagaaagagtaatgaaacagccaagacgaacttgtaccctcccaaactat
ccaaaaggcagccaggatattttaggcaagattgcacatttagctcaaattgaggataat
gaagcagcaaaagttatctcttggcatttggcaagtgacatggactgtgtagtcacactg
actactgaagccgctcgttctatttttgatgaaactcaaggtcgacagcaagtgttaccc
cttgattctatttacaagaagacactccctgattggaacaggcctttgcctcacttgaga
aatggaaaaatcttcttcagacctattggaaatcctgtatttgccagagatctgttaaca
tttccagataatgtagagcattgtcaaacagtgtttgggatgctcttgggtgacactatc
attatagataacttggatgctgccaaccattacagaaaagaggttgtaaaaattacacat
tgccctactttgctgactagggaaggagacaggattcgcagcaatggaaaatttggaggc
cttcagaataaagctcctccaatggacaaactcagaggaatggtatttggagcacccatg
ccaaaactttactctactttctctggacagatagatcttcttcagcaataccgtgcagca
gtggtgaaacttgataatgtgaataaggaccttgatttacatttgcagtcacttaacact
ccagaaatgcagaagaaaaaacaggaacttgccgaacaagagaaaagcctcaagctaata
gagcaaaaattgggtatgactccatcagataaagtcactgaatcattacttcagccacat
catatgttagatatgtctgacacccccatccctcccaaaagaatgcgaagagaaacagta
aaaaaattgtatagctcagaagaatggatctcctctcccacaaagaagcagcagcaacag
caactgctgcaaatatccccttcagaacttaatgggactccacgaaagagaaaggcataa
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integrated database retrieval system
