Acanthisitta chloris (rifleman): 103804374
Help
Entry
103804374 CDS
T08456
Symbol
DDX58
Name
(RefSeq) probable ATP-dependent RNA helicase DDX58
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
achl
Acanthisitta chloris (rifleman)
Pathway
achl04622
RIG-I-like receptor signaling pathway
achl04623
Cytosolic DNA-sensing pathway
achl05164
Influenza A
achl05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
achl00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
103804374 (DDX58)
04623 Cytosolic DNA-sensing pathway
103804374 (DDX58)
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
103804374 (DDX58)
05168 Herpes simplex virus 1 infection
103804374 (DDX58)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
achl04054
]
103804374 (DDX58)
Enzymes [BR:
achl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103804374 (DDX58)
Pattern recognition receptors [BR:
achl04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
103804374 (DDX58)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RIG-I_C
RIG-I_C-RD
DEAD
ResIII
CARD_2
Helicase_C
AAA_19
AAA_22
Motif
Other DBs
NCBI-GeneID:
103804374
NCBI-ProteinID:
XP_009075234
LinkDB
All DBs
Position
Unknown
AA seq
816 aa
AA seq
DB search
MLEIDPVKLMPYINTCLIERECDEIMQISEHRSKAAGITKLIECLCRSDKENWPKTLQIA
LDNAEYYSASELWAVREDNGKDVDGDMTDASEKWFETTMTFSEEAECDNNLSENLSSVSE
GVYQSSSVYEPKTARSYQIELAQPAFNGKNTLISAPTGSGKTFVALMICEHHFQHMPSGR
KAKVVFLATKVPVYEQQKNVFRQHFERSGYSVQGICGETVANVSVEEVIQDSDIIVLTPQ
ILVNSIKNGILSSLSIFTLMIFDECHNTTGNHPYNVLMTKYLEQKFESSGNQLPQIVGLT
ASVGVGNAKCIKETVEHICTLCSYLDIQAISTVRENKEDLQRFRNKPETHVRWVKRRAQN
HFANIISALMTETEALMRKIYSVGTISQVNKYDFGTQKYEQWVVLTQKKCRLLKLPDKEK
ESNICRDLFICTEHLRKFNDALIISEDARIEDALAYLKEFFTNVKNGPYTELEKQLTDKF
QEKEQQLTALSKDESNENPKLEELGCILDEAYHYNPQTRAIVFAKTRALAAALKKWIEAN
PLLSHIKPDVLMGRGKRDSETGMTLPMQKGVLDAFKTDQDHRLLIATSVGDEGIDISECN
LIVLYEYFGNVTKMIQVRGRGRARGSKCILVTDKAEVVEKDKHNHYMEELMNEAIEKLQN
WDETTFARKIHDLQMKEKVLRDSRKKQTTHKVVEEKKNLLCGKCKAYACSTDDIRIIKES
HHTVLGDAFKERYITKPHKKPGQIDGFQKKSKMHCQNTDCQHDWGITVKYKTFDDLPVIK
IKSFVVENIETGTQMDFQKWKNINLCLKSFDDETFS
NT seq
2451 nt
NT seq
+upstream
nt +downstream
nt
atgctagaaattgatccagtaaaactcatgccttacataaacacatgcctgatagagagg
gagtgtgatgagatcatgcagattagtgaacacagaagcaaagcagctgggataactaaa
ctcattgaatgtctctgtcgttcggataaagaaaactggccaaaaactcttcagatagca
ctggataacgcagagtattactctgcaagtgaactgtgggctgtaagagaagataatggc
aaagatgttgatggtgacatgacagatgcctctgagaaatggtttgaaaccacaatgaca
ttttcagaagaagcagaatgtgacaataatctcagtgagaatctctcttcagtttcagaa
ggggtctatcagtcttcctctgtttatgaaccgaagacagctcggagctaccaaattgaa
cttgcacagcctgctttcaatgggaaaaacacgttgatatctgcccccacagggtctgga
aaaacttttgtggcacttatgatttgtgaacaccatttccaacatatgccctcgggacga
aaggcaaaagttgtctttcttgcaaccaaagtgccagtgtatgaacaacagaaaaatgta
ttcagacagcattttgaaagaagtggatattctgttcaaggaatttgtggtgaaacagtt
gcaaatgtgtctgtagaagaggttatacaggacagcgacatcattgtgctaacaccccag
attcttgtcaatagcatcaagaatgggatccttagctccctctccatcttcactctgatg
atatttgatgagtgccacaacactacaggcaaccacccctacaatgtgttaatgaccaaa
tacctggaacaaaaatttgaatcctctggaaaccagctgcctcagattgtaggtttaact
gcttctgttggagttggtaatgccaagtgcatcaaggaaactgtggagcacatctgtacc
ctctgctcctaccttgacatacaggccatatccactgtcagagaaaacaaagaggatctg
cagagattcagaaacaagccagaaacacatgtcagatgggttaaaaggagagctcagaat
cactttgcaaacattatctcagctctgatgacagagacagaggcattgatgaggaagatt
tattcagtgggcactatttcccaagtcaacaagtatgattttggaacacagaaatatgaa
caatgggtagttctcactcagaagaaatgcagactgttgaaactgccagataaggagaag
gagagcaacatttgtagagaccttttcatttgtactgaacacctgcggaaattcaatgat
gctctcattatcagtgaagatgcccgcatcgaagatgctttagcctaccttaaggaattc
ttcacaaatgtaaaaaatggaccatatactgagctagagaagcaactgacggacaaattt
caagagaaagaacagcaactgactgccctttcaaaagatgaatcaaatgagaaccctaag
ctggaagagcttggttgcatcctggatgaagcataccactataacccacagactcgcgct
attgtctttgccaagacacgagccttagcagctgctttgaagaagtggatagaagcaaac
cctctacttagccacataaagccagatgtgttgatgggtcggggaaaaagagatagtgaa
acaggtatgaccctgccaatgcagaagggtgtactagatgcattcaaaactgaccaagac
cacagactgctaattgctacatctgttggtgatgaaggcattgatatttctgagtgcaac
cttattgtgctctatgaatacttcggcaatgtcacaaaaatgatccaagtcagaggtcgt
ggaagggcaagaggcagcaagtgtatccttgtaacagacaaagcagaagtggtcgagaag
gacaaacacaaccattatatggaagagttgatgaatgaagctattgaaaagttacagaat
tgggatgaaacaacttttgcaagaaagatacatgacctgcaaatgaaggaaaaggtgtta
cgagattccaggaagaaacaaacaacacataaagtagtggaagagaaaaaaaatcttctg
tgtggaaaatgcaaagcatatgcctgcagtacagatgacatcagaattataaaggaatct
catcacactgtcctaggagatgcgttcaaggagcgttatataacaaaacctcacaaaaaa
ccaggtcagattgatggttttcagaagaaaagcaagatgcattgccaaaatactgactgc
cagcatgactgggggatcactgtgaagtacaagacatttgatgacctaccagtgatcaaa
atcaaaagttttgtagtagagaacattgaaactgggacgcaaatggattttcagaaatgg
aaaaatattaatttgtgtttgaagagttttgatgatgaaacattcagctga
DBGET
integrated database retrieval system
