Achromobacter sp. E1: V6V88_06040
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Entry
V6V88_06040 CDS
T10430
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
achm Achromobacter sp. E1
Pathway
achm03030
DNA replication
achm03410
Base excision repair
achm03420
Nucleotide excision repair
achm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
achm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
V6V88_06040 (ligA)
03410 Base excision repair
V6V88_06040 (ligA)
03420 Nucleotide excision repair
V6V88_06040 (ligA)
03430 Mismatch repair
V6V88_06040 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
achm03032
]
V6V88_06040 (ligA)
03400 DNA repair and recombination proteins [BR:
achm03400
]
V6V88_06040 (ligA)
Enzymes [BR:
achm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
V6V88_06040 (ligA)
DNA replication proteins [BR:
achm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
V6V88_06040 (ligA)
DNA repair and recombination proteins [BR:
achm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
V6V88_06040 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
V6V88_06040 (ligA)
MMR (mismatch excision repair)
DNA ligase
V6V88_06040 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
V6V88_06040 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
XAZ80095
LinkDB
All DBs
Position
1327536..1329635
Genome browser
AA seq
699 aa
AA seq
DB search
MASRSGENPAQAAARLRAEIEQHNVRYYVYDEPSVSDAEYDGLMRELQALEAEHPELVTP
ESPTQRVGAAPVSAFGSVRHMVPMLSLNNAFSEEEVAAFDRRVTETLRGAGMLGPAQQPD
YFCELKLDGLAISLRYEDGRLVQAATRGDGQTGEDVTSNIRTIKAIPLQLKGAAPKVLEV
RGEVLMNRADFEKLNAAQAKRDEKVFVNPRNAAAGSLRQLDPRITAKRPLRFFAYGWGEV
QGLPGSQSGLFDEASAGAAQASQLPEKSHGAMLEWLSSLGLPVNVVHNHRASGAQGLMDF
YAKVGALRATLPYDIDGVVYKVDSLPAQKVLGFVARAPRFALAHKFAAEEATTTLVDIEV
QVGRTGAITPVARLKPVFVGGVTVTNATLHNEDEIRRKDVRIGDTVIVRRAGDVIPEVLG
PVLEKRPADAREFVMPTQCPVCESAIERLEGETIARCTGGLFCGAQRKQTLWHAASRKAL
DIEGLGEKLVDQLVDSGRVKTLADLYSLRPLELVGLDRMGQKSADNLVAAIEKARSPNLS
RLLFALGIRHVGETTARDVARHFGSIDAIMDADEDALSSVPDVGPVVAASIRHFFAEQHN
RDVIEQLKSQGVNPVAEAAPQDTTLAGKTFVLTGTLPNWTREEASMHIQAAGGKVSGSVS
KKTAYLVAGEDSGSKLTKAQELGVPVLDEDGLKALLGVS
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atggcaagcaggtccggcgagaacccggcgcaagccgcggcgcgcctgcgcgccgaaatc
gaacagcacaacgtccgctactacgtctacgacgagccttccgtctcggatgccgagtac
gacgggctgatgcgcgaattgcaggccctggaggccgagcatcccgaactggtgacgccg
gaatcgcccacgcagcgcgtgggcgcggcaccggtctccgcgtttggcagcgtgcgccac
atggtgccgatgctgtcgctgaacaatgcgttttccgaggaagaggtcgccgctttcgac
cgccgcgtcaccgagacgctgcgcggcgccggcatgctgggaccggcgcagcagccagac
tacttctgtgaactgaagctcgacggcctggcgatcagcctgcgctacgaggacggccgc
ctggtgcaggccgccacccgcggcgacggccagactggcgaggacgtcacgtccaacatc
cgcacgatcaaggcgattcccctgcagttgaagggcgcggccccgaaggtgctggaggtg
cgtggcgaggtgctgatgaaccgcgccgacttcgaaaagctgaacgccgcgcaggccaag
cgcgacgaaaaggtcttcgtcaacccgcgcaatgcggcggcaggcagcctgcgccagctc
gatccgcgcatcacggccaagcggccgctgcgtttctttgcctacggctggggcgaggtc
cagggcttgcccggctcgcagagcggcttgtttgacgaagcctccgcgggcgcggcgcag
gcgtcccaactgcccgagaaatcccacggcgccatgctggagtggttgtcctcgctgggg
ctgccggtcaatgtggtgcacaaccaccgcgcaagcggcgcgcaaggcctgatggacttc
tacgccaaggtgggcgccttgcgcgccaccctgccgtacgacatcgacggcgtggtctac
aaggtcgattcgctgcccgcgcagaaggtgctgggcttcgtggcgcgcgcgccgcgcttt
gcgctggcgcacaagttcgcggccgaagaagccaccacgacgctggtggacatcgaagtg
caggtgggccgcaccggcgccatcaccccggtcgcgcggctcaagcccgtgttcgtgggc
ggcgtcaccgtcaccaacgccacgctgcacaacgaagacgagatccgccgcaaggacgtg
cgcattggcgacaccgtcatcgtgcggcgcgcgggcgacgtgattcccgaagtgctgggc
ccggtgctggaaaagcggcccgccgacgcacgggaattcgtcatgcccacgcaatgcccg
gtttgcgaatcggccatcgagcgcctggaaggcgagaccatcgcgcgctgcaccgggggc
cttttctgtggcgcccagcgcaagcagacactgtggcacgcggccagccgcaaggcgttg
gacatcgaaggcctgggcgaaaagctggtggaccaactggtggacagcggccgcgtcaag
acactggcagacctgtacagcctgcgtccgctggaactcgtgggcctggaccgcatgggc
cagaagtccgcggacaacctggtggccgccatcgagaaggcgcgctcgcccaacctgtcc
cggctgctcttcgcgctgggcatccgccacgtgggcgaaaccacggcgcgggacgtcgcg
cggcatttcggcagcatcgacgccatcatggacgcggacgaagacgccttgtcgtcggtg
ccggacgtggggcccgtggtggccgcgtcgatccggcatttctttgccgagcagcacaac
cgcgacgtcatcgagcaactgaagtcgcagggcgtgaacccggtggccgaagccgcgccg
caagacaccacgctggccggcaagaccttcgtgctgaccggcacgctgcccaactggacg
cgcgaagaggcctcgatgcacatccaggctgcgggcggcaaggtcagcggctcggtgtcc
aagaagacggcctatctggtcgcgggcgaagattccggcagcaagctgaccaaggcccag
gaactgggcgtgccggtgctggatgaggacggactgaaggcgctgctgggcgtttcctag
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integrated database retrieval system
