Actinomyces sp. HMT 175: JJJ14_04015
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Entry
JJJ14_04015 CDS
T10480
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
achn Actinomyces sp. HMT 175
Pathway
achn03030
DNA replication
achn03410
Base excision repair
achn03420
Nucleotide excision repair
achn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
achn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JJJ14_04015 (ligA)
03410 Base excision repair
JJJ14_04015 (ligA)
03420 Nucleotide excision repair
JJJ14_04015 (ligA)
03430 Mismatch repair
JJJ14_04015 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
achn03032
]
JJJ14_04015 (ligA)
03400 DNA repair and recombination proteins [BR:
achn03400
]
JJJ14_04015 (ligA)
Enzymes [BR:
achn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
JJJ14_04015 (ligA)
DNA replication proteins [BR:
achn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JJJ14_04015 (ligA)
DNA repair and recombination proteins [BR:
achn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
JJJ14_04015 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JJJ14_04015 (ligA)
MMR (mismatch excision repair)
DNA ligase
JJJ14_04015 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JJJ14_04015 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
Motif
Other DBs
NCBI-ProteinID:
QQQ59983
LinkDB
All DBs
Position
926091..928547
Genome browser
AA seq
818 aa
AA seq
DB search
MTDTDAPRGSALAPAPSSARSDQRGPVDLSAIPTAARERWSELVRDIEAARDAYYNAIDA
ESPMSDADYDTLYRELEGLEAAHPLLARAGSPTRSVGGRAVTDFAPAPHHERMYSLQDVF
SLDEVQEWAERMVAETGVGDDELAMTAEVKIDGLAVALTYEDGILTRAATRGDGTTGEDV
TGNVRTIASVPLVLAGDAHPSLLEVRGEVYFPTQDFEAFNEERRTRNVQRQADGAPLLQV
FANPRNAAAGSLRQKNPAVTASRPLAMIAHGVGAITPAPGESLPTRQHEWYELLAGWGLP
VSPYNAVVRGRAEREAYIERYAAHRHDLIHEIDGIVFKLDDHSLQRRLGHTSRVPRWATA
YKYPPEEVRTRLLDIAVQVGRTGRVTPFGMMEPVLVAGSTVARATLHNATEVARKGVRIG
DMVIVRKAGDVIPEILGPVVDLRDGSERDFVMPTHCPSCGTELAPAKDGDVDLRCPNTRS
CPAQLTERIAHIGSRGALDVEGLGDEAAGALTRPDAGRLEALTALAAGRSLETEGGRLSL
PPGELDSLHVSQRVEAVEELLKQAGITEQTPVLTGEATLFDLTEDDLREVFVWRPVSRRG
VPTGDWRLSRFFWTKQTYDADGRVKKATAPGKNATAMLSQLRQARSRPLWRILVALSVRH
VGPTAARALAARFRSLEALCQADVAELAEVDGVGPTIAESWARWREVDWHREILSRWEAA
GVRTREEDSEEQEEPARTLEGLTVVVTGSLEGFTRDSAKEAIVSRGGKASGSVSKKTSFV
VVGDKAGSKETKARELGLTILDEEGFVALLEGGPQAVS
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
atgactgacaccgacgcgccccgcggatccgctctcgccccggccccctcctcggcacgc
tccgatcagcgtggccccgtggatctgagcgccatccccaccgccgcccgggagcgttgg
agcgagctggtgcgtgacatcgaggccgcccgcgacgcctactacaacgcgatcgatgcc
gagagccccatgtccgacgccgactacgacaccctctatcgggagctggagggactggag
gcggcccaccccctcctggcccgagccgggtcaccgacccgctccgtgggcgggcgcgcc
gtcaccgacttcgcccccgccccgcaccacgagcgcatgtactcccttcaggacgtcttc
tccctcgacgaggtccaggagtgggccgagcgcatggtcgccgagaccggggtcggcgac
gacgaactcgccatgacagcagaggtcaagatcgacggcctggccgtggccctgacctat
gaggacggcatcctcacccgggccgcgacccgcggcgacggcaccaccggtgaggacgtc
accggtaacgtgcgcaccatcgcctcggtccccctcgtcctggccggcgacgcccacccg
tctctgctcgaggtgcgcggagaggtctacttccccacccaggacttcgaggccttcaac
gaggagcgccgcacccgcaacgtgcagcggcaggccgacggagcccccctcctgcaggtc
ttcgccaacccccgcaatgcggccgccggctcgctgcgccagaagaaccccgctgtcacc
gcctcccggcctctggcgatgatcgcccacggagtcggtgcgatcacccccgcaccgggg
gagagcctccccacccggcagcacgagtggtatgagctgctggccggctgggggctgccg
gtgtccccctacaacgccgtggtgagggggcgcgccgagcgtgaggcctacatcgagcgc
tacgccgcccaccgccacgacctcatccacgagatcgacggcatcgtcttcaagctcgac
gaccactcccttcagcgccgcctgggccacacctcccgagtgccccgctgggccaccgcc
tacaagtacccgcccgaggaggtccgtacccgcctgctggacatcgccgtccaggtcgga
cgcaccggccgcgtcacgcccttcggcatgatggagccggtcctggtcgccggctcgacg
gtggctcgcgccactctccacaacgccaccgaggtggcccgcaagggcgtgcgcatcggg
gacatggtcatcgtgcgcaaggccggcgacgtcatccctgagatcctggggccggtcgtg
gatctgcgtgacggcagcgagcgggacttcgtgatgccgacgcactgcccctcctgcggc
accgagctggcgccggccaaggacggcgacgtcgacctgcgctgccccaatacccggtcc
tgccccgcccagctcaccgagaggatcgctcacatcggctcccggggcgctctggacgtc
gaagggctgggggacgaggccgccggggccctgacccgccccgacgccggacgcctcgag
gcactgaccgcgctcgcggccgggcggagcctggagaccgaaggcggacggctcagcctc
ccgcccggagagctcgactccctccacgtctcccagcgggtggaggccgtcgaggagctc
ctgaagcaggcggggatcaccgagcagacaccggtactcaccggcgaggccaccctgttc
gacctgaccgaggacgacctgcgcgaggtcttcgtctggcgccccgtctcccgtcgaggc
gtgcccaccggtgactggcgcctgagccggttcttctggaccaagcagacctacgacgcc
gacggtcgggtcaagaaggcgactgctccggggaagaacgccaccgccatgctctcccag
ctccgccaggcccgcagccgcccgctgtggcgcatcctggtggctttgtctgtgcgccac
gtcggcccgaccgccgcccgggccctggcggcgcgcttcaggtccctggaggccctgtgc
caggccgatgttgccgagctggccgaggtcgacggcgtcggccccaccatcgccgagtcc
tgggccaggtggcgtgaggtcgactggcatcgcgagatcctcagccgctgggaggccgcc
ggggtccgcacccgggaggaggactcggaggagcaggaggagccggcgcgcaccctggag
ggcctgaccgtcgtcgtcaccggctccctggagggattcacccgggacagcgccaaggag
gccatcgtctcgcgcggcggcaaggcctcgggcagcgtctcgaagaagacgagcttcgtc
gtcgtaggggacaaggcgggctccaaggagaccaaggcccgcgagctggggctgacgatc
cttgacgaggagggtttcgtggcgctcctggagggcggaccccaggcggtctcctga
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