Achromobacter sp. 77: H4P35_05725
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Entry
H4P35_05725 CDS
T08458
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
acho
Achromobacter sp. 77
Pathway
acho03030
DNA replication
acho03410
Base excision repair
acho03420
Nucleotide excision repair
acho03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
acho00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
H4P35_05725 (ligA)
03410 Base excision repair
H4P35_05725 (ligA)
03420 Nucleotide excision repair
H4P35_05725 (ligA)
03430 Mismatch repair
H4P35_05725 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
acho03032
]
H4P35_05725 (ligA)
03400 DNA repair and recombination proteins [BR:
acho03400
]
H4P35_05725 (ligA)
Enzymes [BR:
acho01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
H4P35_05725 (ligA)
DNA replication proteins [BR:
acho03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
H4P35_05725 (ligA)
DNA repair and recombination proteins [BR:
acho03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
H4P35_05725 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
H4P35_05725 (ligA)
MMR (mismatch excision repair)
DNA ligase
H4P35_05725 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
H4P35_05725 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
UDG76846
LinkDB
All DBs
Position
1275862..1277961
Genome browser
AA seq
699 aa
AA seq
DB search
MASRSGENPAQAAARLRAEIEQHNVRYYVYDEPSVSDAEYDGLMRELQALEAEHPELVTP
ESPTQRVGAAPVSAFGSVRHVVPMLSLNNAFSEEEVAAFDRRVTETLRGAGMLGPAQQPD
YFCELKLDGLAISLRYEDGRLVQAATRGDGQTGEDVTSNIRTIKAIPLQLKGAAPKVLEV
RGEVLMNRADFEKLNAAQAKRDEKVFVNPRNAAAGSLRQLDPRITAKRPLRFFAYGWGEV
QGLPGSQSGLFDEASAGAAQASQLPEKSHGAMLEWLSSLGLPVNVVHNHRATGAQGLMDF
YAKVGALRATLPYDIDGVVYKVDSLPAQKVLGFVARAPRFALAHKFAAEEATTTLVDIEV
QVGRTGAITPVARLKPVFVGGVTVTNATLHNEDEIRRKDVRIGDTVIVRRAGDVIPEVLG
PVLEKRPDDAREFVMPTQCPVCESAIERLEGETIARCTGGLFCGAQRKQTLWHAASRKAL
DIEGLGEKLVDQLVDSGRVKTLADLYSLRPLELVGLDRMGQKSADNLVAAIEKARSPNLS
RLLFALGIRHVGETTARDVARHFGSIDAIMDADEDALSSVPDVGPVVAASIRHFFAEQHN
RDVIEQLKSQGVNPVAEAAPQDTTLAGKTFVLTGTLPNWTREEASMHIQAAGGKVSGSVS
KKTAYLVAGEDSGSKLTKAQELGVPVLDEDGLKALLGIS
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atggcaagcaggtccggcgagaacccggcgcaagccgcggcgcgcctgcgcgccgaaatc
gaacagcacaacgtccgctactacgtctacgacgagccttccgtctcggacgccgagtac
gacgggctgatgcgcgaattgcaggccctggaggccgagcatcccgaactggtgacgccg
gaatcgcccacgcagcgcgtgggcgcggcgccagtctccgcgtttggcagcgtgcgccac
gtggtgccgatgctgtcgctgaacaatgcgttttccgaggaagaggtggccgccttcgac
cgccgcgtcaccgagacgctgcgtggcgccggcatgctgggacccgcgcagcagccagac
tatttctgtgaactgaagctcgacggcctggcgatcagcctgcgctacgaggacggccgc
ctggtgcaggccgccacccgcggcgacggccagaccggcgaggacgtcacgtccaacatc
cgcacgatcaaggcaattcccctgcagttgaagggcgcggccccgaaggtgctggaggtg
cgcggcgaggtgctgatgaaccgcgccgacttcgaaaagctgaacgccgcgcaggccaag
cgcgacgaaaaggtcttcgtcaacccgcgcaatgcggcggcaggcagcctgcgccagctc
gacccgcgcatcacggccaagcggccgctgcgtttctttgcctacggctggggcgaggtc
cagggcttgcccggctcgcagagcggcctgttcgacgaagcctccgcgggcgcggcgcag
gcgtcgcaactgcccgagaaatctcacggcgccatgctggagtggctgtcctcgctggga
ctgccggtcaatgtggtgcacaaccatcgcgcaaccggcgcgcaaggcctgatggacttc
tacgccaaggtgggcgccttgcgcgccaccctgccgtacgacatcgacggcgtggtctac
aaggttgattcgctgcccgcgcagaaggtgctgggcttcgtggcgcgcgcgccgcgcttt
gcgctggcgcacaagttcgcggccgaagaagccaccacgacgctggtggacatcgaagtg
caggtgggccgcaccggcgccatcaccccggtcgcgcggctcaagcccgtgttcgtgggc
ggcgttaccgtcaccaacgccacgctgcacaacgaagacgagatccgccgcaaggacgtg
cgcattggcgacaccgtcatcgtgcggcgcgcgggcgacgtgattcccgaagtgctgggc
ccggtgctggaaaagcggcccgacgatgcgcgtgaattcgtcatgcccacgcaatgcccg
gtctgcgagtcggccatcgagcgcctggaaggcgagaccatcgcgcgctgcaccgggggc
cttttctgtggcgcccagcgcaagcagacactgtggcacgccgccagccgcaaggccctg
gatatcgaaggcctgggcgaaaagctggtggaccaattggtggacagcggccgcgtcaag
acgctggcggacctgtacagcctgcgtccgctggaactcgtgggcctggaccgcatgggc
cagaagtctgcggacaacctggtggccgccatcgagaaggcgcgctcgcccaacctgtcc
cggctgcttttcgcgctgggcatccgccacgtgggcgaaaccacggcgcgggacgtcgcg
cggcatttcggcagcatcgacgccatcatggacgcggacgaagacgccttgtcgtcggta
ccggacgtggggcccgtggtggccgcgtcgatccggcatttctttgccgagcagcacaac
cgcgacgtcatcgagcaactcaagtcgcagggcgtgaacccggtggccgaagccgcgccg
caagacaccacgctggccggcaagaccttcgtgctgaccggcacgctgcccaactggacg
cgcgaagaggcctcgatgcacatccaagccgcgggcggcaaggtcagcggctcggtgtcc
aagaagacggcctatctggttgcgggcgaagattccggcagcaagctgaccaaggcccag
gaactgggcgtgccggtgctggatgaagacggactgaaggcgctgctgggcatttcctag
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