Acinetobacter sp. Ac-14: IOD65_15680
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Entry
IOD65_15680 CDS
T11083
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
acic Acinetobacter sp. Ac-14
Pathway
acic03030
DNA replication
acic03410
Base excision repair
acic03420
Nucleotide excision repair
acic03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
acic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IOD65_15680 (ligA)
03410 Base excision repair
IOD65_15680 (ligA)
03420 Nucleotide excision repair
IOD65_15680 (ligA)
03430 Mismatch repair
IOD65_15680 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
acic03032
]
IOD65_15680 (ligA)
03400 DNA repair and recombination proteins [BR:
acic03400
]
IOD65_15680 (ligA)
Enzymes [BR:
acic01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
IOD65_15680 (ligA)
DNA replication proteins [BR:
acic03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
IOD65_15680 (ligA)
DNA repair and recombination proteins [BR:
acic03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
IOD65_15680 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
IOD65_15680 (ligA)
MMR (mismatch excision repair)
DNA ligase
IOD65_15680 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
IOD65_15680 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH
FmiP_Thoc5
5_3_exonuc
DUF724
ZapB
Motif
Other DBs
NCBI-ProteinID:
QOW98560
LinkDB
All DBs
Position
complement(3273017..3275056)
Genome browser
AA seq
679 aa
AA seq
DB search
MATTSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPDLVQSDSP
TTKVGGQALSKFQSVTHVVPMLSLGNVFNQEDLFAFARRVEERLPNQKVQYEVELKLDGL
AISLWYENGVLIRGVTRGDGETGEDITQNVKTIRNLPKVLHSDHFEIPRLLEVRGEVLMP
KSGFEKLNAEQEAKGDKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCEPNHGLT
TMHDSLQWLTKLGFEIAERQYLCNSIQEVQQRYEQIQQERSDLQVEIDGMVVKVDDLKQQ
QQLGFLSREPRWATAYKFPAQAALTTVDQIDWQVGRTGTLTPVARLNPVFVGGVTVSNVT
LHNIGEIHRLDVRVGDTVSVYRTGDVIPKVEKVWPEFRPVDAEVVHLPENCPVCASPVVM
PEGEALARCSGGLYCAAQRIEAIRHFVSRKALDIEGLGDRWVESLLHLDLLKDVADIYHL
HEHRETLLGIEKMGEKSVQNLIDAIEASKKTTLARFIYALGIRGVGETTARMLANTFQTL
EALKAADVEALKKTPDVGDITAEWIADFFLAPHNIEVLDRLIAAGIHWDAPTAPTRQPLN
GESWVLTGTLEQMTRDQATQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIAV
MNETDFLSLMASYGQTLSE
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atggcaacaacttccgtgatcgaacagatgcgtcagcttattcaactgattgcaaagcat
aaccatgcctactatgtcatggatcagccaacaatctcggacagtgaatatgatcattta
tttcaccagttaaaagctttagaagagcaatatcctgatcttgttcaatcagattcacca
actacaaaagtaggtggacaagcactctctaaatttcaaagtgtgactcatgtagttccg
atgctttctttggggaacgtttttaatcaagaagatttattcgcatttgcacgtcgtgtt
gaagagcgtttgcctaatcaaaaagtacaatacgaagtcgaactaaaacttgatggtctt
gcgatttctctttggtatgaaaatggtgtgttaatacgtggcgttacacgtggtgacgga
gaaactggggaggacattacgcagaacgttaaaacgattcgtaatttgcctaaagtgtta
cattcagatcactttgaaattccacgtttgctggaagttcgtggtgaagtacttatgcca
aagtctggttttgaaaaactcaatgctgaacaggaagccaaaggcgataaaacatttgcc
aacccgcgtaatgccgcagctggtagtttaagacagctcgatcctaatattgctgcggct
cgacctttagcattttatgcttacggcatcgctcaatgtgaacctaatcatggcttaact
accatgcatgacagtctgcaatggctcacaaaacttggatttgaaattgctgaacgtcaa
tatctgtgtaattcaattcaagaagtacagcaacgttatgagcaaattcagcaagaacgt
tcagatctacaagttgaaattgatgggatggttgtaaaggttgatgacttaaagcaacaa
caacaacttggttttttaagtcgtgaaccacgttgggcaactgcttataaattccctgca
caagctgcattaactacagttgatcagattgactggcaagtagggcgtacaggtactttg
actcctgtagcgcgtttaaaccctgtatttgtgggaggagttacagtttccaatgtaact
ttacacaacattggtgagatccatcgcctagatgtacgtgttggtgacacggtgagtgtt
tatcgtacaggcgatgttattcctaaagtagaaaaagtttggccagagttccgtcctgtt
gatgctgaagttgtacatttacctgaaaactgtcctgtttgtgcctcaccagtggtaatg
ccagaaggggaagctttagcacgttgttctggtggactgtattgtgctgcacagcgtatt
gaagcgattcgtcacttcgtatcacgtaaagctctagatattgaaggtctaggcgatcgt
tgggtagagtctttattacacctcgatttgctcaaagatgttgccgatatttatcatttg
cacgaacaccgagaaactttactcgggattgaaaaaatgggcgagaaatcggtacaaaat
ctgattgatgccattgaagccagtaaaaagacaacgcttgcgcgttttatttatgctctg
ggaattcgtggggtaggtgaaacaacagctaggatgttagccaatactttccaaactttg
gaggcgcttaaagctgctgatgttgaagctttaaagaaaacaccagatgttggtgatatt
actgccgagtggattgctgactttttcttggcaccgcacaacattgaagtgcttgatcgc
ttaattgcagcaggaattcattgggatgcaccgactgcaccaacacgacagccattaaat
ggcgaaagctgggtgttaacgggcacattagagcaaatgacccgtgatcaggcaacacaa
atgctacaagcattaggtgcgcgtgtaagcggtagtgtatcgagtaaaaccaaatgtgtt
gttgcgggcgagaaggctggttcgaaattagaaaaagcagcaaaactaggtattgctgtt
atgaatgagactgatttcttatcacttatggcaagctacgggcagactttaagcgaatag
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