Acinetobacter sp. BHS4: KIP84_14545
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Entry
KIP84_14545 CDS
T09875
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
acie
Acinetobacter sp. BHS4
Pathway
acie03030
DNA replication
acie03410
Base excision repair
acie03420
Nucleotide excision repair
acie03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
acie00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KIP84_14545 (ligA)
03410 Base excision repair
KIP84_14545 (ligA)
03420 Nucleotide excision repair
KIP84_14545 (ligA)
03430 Mismatch repair
KIP84_14545 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
acie03032
]
KIP84_14545 (ligA)
03400 DNA repair and recombination proteins [BR:
acie03400
]
KIP84_14545 (ligA)
Enzymes [BR:
acie01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KIP84_14545 (ligA)
DNA replication proteins [BR:
acie03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KIP84_14545 (ligA)
DNA repair and recombination proteins [BR:
acie03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KIP84_14545 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KIP84_14545 (ligA)
MMR (mismatch excision repair)
DNA ligase
KIP84_14545 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KIP84_14545 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH
FmiP_Thoc5
5_3_exonuc
DUF724
ZapB
Motif
Other DBs
NCBI-ProteinID:
QVR67253
LinkDB
All DBs
Position
complement(3016808..3018847)
Genome browser
AA seq
679 aa
AA seq
DB search
MATTSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPDLVQSDSP
TTKVGGQALSKFQSVTHVVPMLSLGNVFNQEDLFAFARRVEERLPNQKVQYEVELKLDGL
AISLWYENGVLIRGVTRGDGETGEDITQNVKTIRNLPKVLHSDHFEIPRLLEVRGEVLMP
KSGFEKLNAEQEAKGDKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCEPNHGLT
TMHDSLQWLTKLGFEIAERQYLCNSIQEVQQRYEQIQQERSDLQVEIDGMVVKVDDLKQQ
QQLGFLSREPRWATAYKFPAQAALTTVDQIDWQVGRTGTLTPVARLNPVFVGGVTVSNVT
LHNIGEIHRLDVRVGDTVSVYRTGDVIPKVEKVWPEFRPVDAEVVYLPENCPVCASPVVM
PEGEALARCSGGLYCAAQRIEAIRHFVSRKALDIEGLGDRWVESLLHLDLLKDVADIYHL
HEHRETLLGIEKMGEKSVQNLIDAIEASKKTTLARFIYALGIRGVGETTARMLANTFQTL
EALKAADVEALKKTPDVGDITAEWIADFFLAPHNIEVLDRLIAAGIHWDAPTAPTRQPLN
GESWVLTGTLEQMTRDQATQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIAV
MNETNFLSLMASYGQTLSE
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atggcaacaacttccgtgatcgaacagatgcgtcagcttattcaactgattgcaaagcat
aaccatgcctactatgtcatggatcagccgacaatctcggacagtgaatatgaccattta
tttcaccagttaaaagctttagaagagcaatatcctgatcttgttcaatcagattcacca
actacaaaagtaggtggacaagcactttctaaatttcaaagtgtgactcatgtagttccg
atgctttctttggggaacgtttttaatcaggaagatttattcgcatttgcacgtcgtgtt
gaggagcgtttgcctaatcaaaaagtacaatacgaagtcgaactaaaacttgatggtctt
gcgatttctctttggtatgaaaatggtgtgttaatacgtggcgttacacgtggtgacgga
gaaactggggaggacattacccagaacgttaaaacgattcgtaatttgcctaaagtgtta
cattcagatcactttgaaattccacgtttgctggaagttcgtggtgaagtacttatgcca
aagtctggttttgaaaaactcaatgctgaacaggaagccaaaggcgataaaacatttgcc
aacccgcgtaatgccgcagctggtagtttaagacaactcgatcctaatattgctgcggct
cgacctttagcattttatgcttacggcatcgctcaatgtgaacctaatcatggcttaact
accatgcatgacagtctgcaatggctcacaaaacttggatttgaaattgctgaacgtcaa
tatctttgtaattcaattcaagaagtacagcaacgttatgagcaaattcagcaagaacgt
tcagatttacaagttgaaattgatgggatggttgtaaaggttgatgacttaaagcaacag
caacaacttggttttttaagtcgtgaaccacgttgggcaactgcttataaattccctgca
caagctgcattaactacggttgatcagattgattggcaagtagggcgtacaggtactttg
actcctgtagcgcgtttaaaccctgtatttgtgggaggagttacagtttccaatgtaact
ttacacaacattggtgagatccatcgcctagatgtacgtgttggtgacacggtgagtgtt
tatcgtacaggcgatgttattcctaaagtagaaaaagtctggccagaattccgtcctgtt
gatgccgaagttgtatatttacctgaaaactgtcctgtttgtgcctcaccagtggtaatg
cctgaaggggaagctttagcacgttgttctggtggtctgtattgtgctgcacagcgtatt
gaagcgattcgtcacttcgtatcacgtaaagctctggatattgaaggtctaggtgatcgt
tgggtagagtctttattacacctcgatttgctcaaagatgttgccgatatttaccatttg
cacgaacaccgagaaactttactcgggattgaaaaaatgggtgagaaatcggtacaaaat
ctaattgatgccattgaagccagtaagaagacaacgcttgcgcgttttatttatgctctg
ggaattcgtggggtaggtgaaacaacagctagaatgttagccaatactttccaaactttg
gaagcgcttaaagctgctgatgttgaagctttaaagaaaacaccagatgttggcgatatt
actgcagaatggattgctgactttttcttggcaccgcacaacatagaagtgcttgatcgc
ttaattgcggcaggaattcattgggatgcaccgactgcaccaacacgacagccattaaat
ggcgaaagctgggtattaacaggcactttagagcaaatgacccgtgatcaggcgactcaa
atgctacaagcattaggtgcacgtgtaagcggtagtgtatcgagtaaaaccaaatgtgtt
gttgcgggtgagaaggctggttcgaaattagaaaaagcagcaaaactaggtattgctgtt
atgaatgagactaatttcttatcacttatggcaagctacgggcagactttaagcgaatag
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integrated database retrieval system
