Acinetobacter sp. LUNF3: MN200_12710
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Entry
MN200_12710 CDS
T11100
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
acif Acinetobacter sp. LUNF3
Pathway
acif03030
DNA replication
acif03410
Base excision repair
acif03420
Nucleotide excision repair
acif03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
acif00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MN200_12710 (ligA)
03410 Base excision repair
MN200_12710 (ligA)
03420 Nucleotide excision repair
MN200_12710 (ligA)
03430 Mismatch repair
MN200_12710 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
acif03032
]
MN200_12710 (ligA)
03400 DNA repair and recombination proteins [BR:
acif03400
]
MN200_12710 (ligA)
Enzymes [BR:
acif01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MN200_12710 (ligA)
DNA replication proteins [BR:
acif03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MN200_12710 (ligA)
DNA repair and recombination proteins [BR:
acif03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MN200_12710 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MN200_12710 (ligA)
MMR (mismatch excision repair)
DNA ligase
MN200_12710 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MN200_12710 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
RNA_lig_T4_1
HHH
GFRP
zf-C2H2_ZFAND2
Motif
Other DBs
NCBI-ProteinID:
UNT42655
LinkDB
All DBs
Position
complement(2612409..2614448)
Genome browser
AA seq
679 aa
AA seq
DB search
MTQTSTVVAQMRQLIQILAQHNHAYYVMDQPTILDSEYDQLFHQLKALEEQYPEYIQPDS
PINKVGVKPLAKFTSVTHVVPMLSLGNVFNKEELFAFARRAEERLPNQTIQYDVELKFDG
LAISLWYEQGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLTTNQGEVPTLLEVRGEVLM
PKAGFEKLNAENEAKGEKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCEPNHGQ
NTMSESLEWLQQFGFAVGERHFVCDSIQEVQAVYEQINAERPQLSVEIDGMVIKVNSLKQ
QQQLGFLSREPRWATAYKFPAVAALTTVEHIDWQVGRTGTLTPVARLNPVAVGGVTVSNV
TLHNIGEIHRLDVRIGDTVSVYRSGDVIPKVEKVWPEFRPVDATEVELPSQCPVCESPVV
MPEGEALARCSGGLYCAAQRIEAIRHFVSRKALDIEGLGDRWVESLLHLDLLKDVADIYH
LHEHREKLLTIEKMGEKSVQNLIDSIENSKKTTLAAFIYALGIRGVGETTARMLANTFQT
LDALRVADIEALKKTPDVGDITAEWIVDFFQAPHNLEVLDRLLAAGIHWDAPVAPSRQPL
NGESWVVTGTLSTMGRDEATQLLQALGARVSGSVSSKTKCVVAGEKAGSKLDKAEKLGIA
VINEAEFIQLMKDYGQLAV
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atgactcaaacttcgactgtcgttgcgcaaatgcgtcaactgatccaaattttggcacag
cataatcatgcttattatgtgatggatcagccgaccattttagacagtgaatatgatcag
ctttttcatcagttgaaagctttagaagaacaataccctgagtatattcagccagacagc
ccgatcaataaagtcggtgttaaacctttggcgaagtttacgagcgtgacccatgtggta
ccgatgctgtctttaggcaatgtgtttaataaagaagaactttttgcctttgcacgccgt
gcagaagaacggttgccgaatcaaacgattcaatacgatgttgaactgaagttcgatggt
cttgccatttcactgtggtatgaacagggtgtgctggtgcgtggcgtaacccgtggtgat
ggtgagacaggggaagacattacccaaaacgtcaaaaccattcggaacttgccgaaggtg
ttgaccacaaatcagggcgaagtacctacattactagaagttcgtggcgaagtcttgatg
cctaaagcaggctttgaaaagctcaatgcagaaaatgaagccaaaggtgaaaagactttt
gccaatccacggaatgccgcagcgggaagtctacgtcagttagacccgaacattgcggct
gcacgtccacttgcattttatgcttatggtattgcgcagtgtgaacccaatcatgggcaa
aataccatgtcggaaagtctagagtggttgcaacagtttggttttgcagttggtgagcgt
cattttgtctgcgatagtattcaagaagttcaagcggtttatgagcaaatcaatgcggaa
cgaccacaattgagtgtggaaattgacggcatggtgattaaggtcaacagtctcaaacaa
cagcaacagctcgggtttttaagtcgagaaccgcgttgggcaacggcgtataaattccct
gcggtggctgcgcttaccacggttgaacatattgactggcaagtgggccgtacaggtaca
ctgacccctgtggcgcgtttgaatcctgttgctgtgggcggcgtgaccgtttcaaatgtg
actttgcataatattggggaaattcaccgtctagatgtgcgaattggcgatactgtcagt
gtttaccgtagtggtgatgtgattcccaaagtggaaaaagtgtggcccgagttccgtcca
gtcgatgcgactgaagttgaactcccgagccaatgtcctgtgtgtgaatcacctgtggtg
atgcccgaaggtgaagctttagcgcgttgctctggtggtttgtattgtgccgcacagcgt
atcgaggcaattcgccacttcgtatcacgtaaagctcttgatattgaagggttgggtgat
cgttgggtcgagtcactgttacatcttgatctgcttaaagatgtggctgatatttatcac
ctacatgagcaccgagaaaagctattaaccattgaaaaaatgggtgagaagtccgttcag
aacttgattgattcgattgaaaatagcaagaagactaccttggctgcatttatttatgca
ttggggattcgtggcgtgggtgaaaccacagcacgtatgttggcaaatactttccaaact
ttagatgcgctacgtgtcgcagacattgaagctttaaagaaaaccccagatgtgggggat
atcacggcagagtggattgtcgactttttccaagcgccgcataaccttgaagttttagac
cgattattggcggcaggtattcactgggatgcgcctgtggcaccaagtcgccagcctcta
aatggagaaagttgggtcgtgacgggtacactcagtacgatggggcgtgatgaagcaacg
cagctcctacaagcactgggtgcacgtgtgagtggtagtgtgtcgagtaaaaccaagtgt
gttgttgcaggtgaaaaagcaggttcaaagctggataaagcagagaagcttgggattgct
gtgattaatgaagctgagtttattcaactgatgaaagattatggacaattagcggtttag
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integrated database retrieval system
