Acidiferrobacter sp. SPIII_3: C4901_07960
Help
Entry
C4901_07960 CDS
T05469
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
acii
Acidiferrobacter sp. SPIII_3
Pathway
acii03030
DNA replication
acii03410
Base excision repair
acii03420
Nucleotide excision repair
acii03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
acii00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
C4901_07960 (ligA)
03410 Base excision repair
C4901_07960 (ligA)
03420 Nucleotide excision repair
C4901_07960 (ligA)
03430 Mismatch repair
C4901_07960 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
acii03032
]
C4901_07960 (ligA)
03400 DNA repair and recombination proteins [BR:
acii03400
]
C4901_07960 (ligA)
Enzymes [BR:
acii01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
C4901_07960 (ligA)
DNA replication proteins [BR:
acii03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
C4901_07960 (ligA)
DNA repair and recombination proteins [BR:
acii03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
C4901_07960 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
C4901_07960 (ligA)
MMR (mismatch excision repair)
DNA ligase
C4901_07960 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
C4901_07960 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
HHH
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
DNA_pol_lambd_f
5_3_exonuc
Auto_anti-p27
RNA_pol_A_CTD
DZR_2
Motif
Other DBs
NCBI-ProteinID:
AWP23276
LinkDB
All DBs
Position
1605831..1607858
Genome browser
AA seq
675 aa
AA seq
DB search
MTQDAAGARAAELRAALDYHSHRYYVLDDPEISDAEYDRLFAELVELERARPDLARPDSP
TQRVGARPSATFVPVVHGQAMLSLANVFSEQELVDFDRRVRERLGHDDVIYVAEPKLDGL
AVSLRYEDGLLVRAATRGDGTTGEDVTANVRTIRTCPLRLRSAAPPRILKVRGEIYMPRE
GFLRLNEAQVAQGGKPFANPRNAAAGSLRQLDPTVSAQRPLRLFCYGTGEWSGGEVPRSQ
ERLLTCLADFGLPVNPERRVVTGYEGCLRYYADLGRRRAELAYEIDGVVYKVNDTAEQRL
LGELSRTPRWAVAHKFPAEEAVTQVVRIDVQVGRTGALTPVAVLTPVAVGGVMVSHATLH
NPDELARKDVRIGDWVSVRRAGDVIPEIVGVVLDKRPGDARPFPFPDHCPVCGSPAVRDQ
GVVARCAGGLVCQAQRRQTIRHFASRRALDIEGVGDKLVEQLVDGGLVETVADLFKLTVS
DLAGLERMGERSATKVTQAIAASRMTTLPRFLYALGIPEVGEATARALAQHFASLEALLA
ADEHELTAVPDVGPVVAHAIAVFFSEPHNRAVIAGLQAAGVRWPALERPARGPLSGKTVV
LTGTLSGMTREQARTALEGLGAKVASSVSPRTDYVVAGRDPGSKVKRAEEYGVPVIDEQG
LRAWLDKGPATGDES
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgacgcaagacgcagccggcgcacgcgcggccgagttgcgcgccgcgcttgactaccac
agtcatcgctactatgtgctggacgacccggaaatcagcgatgccgagtatgaccggctg
tttgccgaactcgtggaactcgagcgcgcgcggcccgatctcgcgcggccggattcaccc
acgcagagagtgggggcgcggccgagcgcgacgtttgtcccggtagtccatgggcaggcg
atgctatcgctcgccaatgtcttttccgagcaagagcttgtcgatttcgatcgccgggtg
cgcgagcgcctgggacatgacgacgtcatctacgtcgcggagcccaaactcgatggattg
gcggtaagcctgcgctacgaagacgggctgctggtgcgcgcggccacgcgcggcgacggc
accaccggagaggatgtgacggctaatgtgcgcacgatccgcacttgccctttgcgcctg
cggagcgccgcaccgccgcgtatcctgaaggtgcggggcgagatctacatgccgcgcgag
ggattcctgcgcctgaatgaggcacaggtggcgcagggcggcaagccgtttgccaatccg
cgcaatgccgccgccgggagcctgcgccagctcgatccgacggtcagtgcgcaacgtccc
ttgcggttattttgttatggcacgggcgaatggtccggtggcgaggtgccgcgttcccaa
gagcggcttctcacatgtctcgcggacttcgggctgccggtcaaccccgagcggcgcgtg
gtgacgggctatgagggctgcctgcgatattacgccgacctgggacgccgccgcgcagag
cttgcctacgagatcgatggtgtggtctacaaggtcaacgataccgccgagcagcgcctc
ctcggggagctgtcgcgcacgccgcgctgggcggtagcccacaagttcccggcggaggag
gccgtgacgcaggtcgtgcgcatcgatgtgcaggtgggccgcaccggggccctgacgccg
gttgcggttttgacgccggtggccgtcggcggcgtgatggtcagccacgcaaccttgcac
aatcccgatgagctggcccgcaaggacgtgcggatcggggattgggtgagcgtgcgccgc
gccggtgatgtgatccccgagatcgtcggtgtggtgcttgacaaacgcccgggcgatgcc
agaccgttccccttccccgaccattgtcccgtgtgcgggtcaccggcggtgcgcgatcag
ggcgtggtggcgcgctgcgcgggtggtctcgtctgtcaggcgcagaggcgccaaacgatc
cggcattttgcctcgcgacgggccctggatatcgagggcgtgggcgacaaactggtcgaa
cagttggtcgacgggggtctcgtcgagacagtcgccgatctcttcaagctgacggtctcg
gacctggcgggcctcgagcgcatgggcgaacggtccgcgaccaaggtcacgcaggccatc
gccgcgagccgtatgacgaccttgccgcgttttttgtatgcgctcgggattccggaggtg
ggggaggccaccgcacgcgccctggcgcagcacttcgcgagcctcgaggccctgttggcg
gccgatgaacatgagctcaccgcggtgcccgatgtcgggccggtggtcgcgcatgccatc
gcggtgttcttctccgagccccataatcgcgccgtgatcgccggcctgcaggccgcgggg
gtccgctggccggccctggagaggccggcacgtggtccgctgtccggcaagaccgtggtg
ctgacagggaccctttcgggtatgacgcgcgaacaggcgcgcacggcccttgaaggtctt
ggggcgaaggtcgcctccagcgtctcgccgcgcacggattacgtggtggccggacgcgat
ccgggcagcaaggtcaaacgggccgaggagtacggcgtgccggtcatagacgagcagggt
ctgcgcgcatggctcgataagggcccggctacgggcgacgagtcatag
DBGET
integrated database retrieval system
