Acidipropionibacterium virtanenii: JS278_01191
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Entry
JS278_01191 CDS
T05538
Symbol
ligA
Name
(GenBank) DNA ligase A
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
acij
Acidipropionibacterium virtanenii
Pathway
acij03030
DNA replication
acij03410
Base excision repair
acij03420
Nucleotide excision repair
acij03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
acij00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JS278_01191 (ligA)
03410 Base excision repair
JS278_01191 (ligA)
03420 Nucleotide excision repair
JS278_01191 (ligA)
03430 Mismatch repair
JS278_01191 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
acij03032
]
JS278_01191 (ligA)
03400 DNA repair and recombination proteins [BR:
acij03400
]
JS278_01191 (ligA)
Enzymes [BR:
acij01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
JS278_01191 (ligA)
DNA replication proteins [BR:
acij03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JS278_01191 (ligA)
DNA repair and recombination proteins [BR:
acij03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
JS278_01191 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JS278_01191 (ligA)
MMR (mismatch excision repair)
DNA ligase
JS278_01191 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JS278_01191 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
HHH
PTCB-BRCT
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AXE38369
UniProt:
A0A344USX1
LinkDB
All DBs
Position
1312293..1314506
Genome browser
AA seq
737 aa
AA seq
DB search
MVNEQTPVEGSAEESEPRQHWGDLVARIEAAQQAYYGEDAPTISDAEYDRLMIELQELEE
ANPALRTPESPTQRVGAPQKITDFAPVEHIERLLSLDDVFTIDDLEAWMARAGAEAPERT
RYLCELKIDGLAIDLVYRRGRLVSGATRGDGRVGEDVTGNVRTISAIPRRLSGDDIPDLL
EVRGEVFFPVTDFEDLNAHLVEVGKPPFANPRNAAAGSLRQKDPRITADRPLSMICHGLG
RVEGYQFPSQGKAYDKLAEWGLPVSPYYKLVGTRAAVLSFVRHWGEHRDEASHQIDGVVV
KMDDMSVQRALGATSRAPRWAVAYKYPPEEVNTRLLDIQVNVGRTGRVTPFGVMEPVTVA
GSTVEMATLHNASEVKRKGVLIGDTVVLRKAGDVIPEILGPVVALRDGTEREFVMPDSCP
SCGTTLAYEKEGDKDLRCPNSRSCPSQQRERVAALAGRGALDIEALGWEAAIALTDPEYS
RPAPEDAEGEMPEPQTPVLSSEAGLFELTADDVSDVKVWRRRKVKGEPGPWQQELYFWTK
PTAKKPSVPSANTKKMFDELTKARSQPLWRVLVALSIRHVGPTAARALAARFGSVQAIRD
ASVDDLAETDGVGRVIAESVLDWFTVDWHREIVERWEAAGVRMADDASEAPQQVLEGLTV
VVTGSLEGFTRDEAKEAILARGGKAAGSVSKKTDYVVVGANAGSKETKARDLGRPILDEA
GFRHLLDNGPQRVPTVG
NT seq
2214 nt
NT seq
+upstream
nt +downstream
nt
atggtgaacgagcagacccctgtggagggcagcgccgaggagtccgagccgcggcagcac
tggggcgatctggtggcccgcatcgaggccgcccagcaggcctactacggcgaggacgcc
ccgaccatctccgatgccgagtacgaccggctgatgatcgagctccaggagctggaggag
gccaacccagcgctgcgcacccccgagtccccgacccagcgggtcggcgccccgcagaag
atcaccgacttcgcccccgtcgagcacatcgaacggcttctcagcctcgacgacgtgttc
accatcgacgacctggaggcctggatggcccgggccggcgccgaggcccccgagaggaca
aggtatctgtgcgagctgaagatcgacggtctggcgatcgacctggtctaccggcgcgga
cggctggtcagcggcgccacccgcggcgacggccgggtcggtgaggacgtcaccggcaac
gtccgcaccatctccgccatcccgcgtcggctgagcggcgacgacatccccgatctgctg
gaggtgcgcggcgaggtgttcttccccgtcacggacttcgaggatctcaacgcccacctg
gtggaggtcggcaagccgcccttcgccaacccgcgcaacgcggcggccgggtcgctgcgc
cagaaggatccgaggatcacggccgaccggccgctgtcgatgatctgccacggtctgggc
cgggtggagggctaccagttccccagccagggcaaggcctacgacaagctcgccgagtgg
gggctaccggtctcgccctactacaaactggtcggcacccgggccgcggtgctgagtttc
gtccgccactggggggagcatcgcgacgaggcgtcacaccagatcgacggggtcgtcgtc
aagatggacgacatgtccgtgcagcgcgcactgggagccacatcccgggcgccccgctgg
gcggtggcctacaagtaccctccggaggaggtcaacaccaggctgctggacatccaggtc
aacgtcgggcgcaccggccgggtgacccccttcggtgtgatggagccggtgaccgtggcc
ggctccacggtcgagatggccaccctgcacaacgcctccgaggtgaagcgcaagggcgtg
ctcatcggcgacaccgtggtactgcgcaaggccggcgacgtcatccccgagatcctcggc
ccggtggtggcgttgcgcgacggcaccgagcgcgagttcgtgatgcccgacagctgcccg
tcgtgcggcacgaccctggcctacgagaaggagggcgacaaggacctgcgctgcccgaac
tcccgctcctgcccctctcagcagcgcgagcgggtcgccgccctggccggtcgcggcgcc
ctggacatcgaggcgctgggctgggaggccgccatcgcactcaccgatcccgagtactcc
aggccggcccccgaggatgcggagggggagatgcccgaaccgcagaccccggtgctgtcc
agcgaggccgggctgttcgagctcaccgccgacgacgtcagcgacgtcaaggtgtggcga
cgccgcaaggtcaagggggaaccggggccctggcagcaggagctgtacttctggaccaag
cccaccgcgaagaagccctcggtgccgagcgccaatacgaagaagatgttcgacgagctg
accaaggcccgcagccagcccctgtggcgggtactggtggcgctgtcgatccggcacgtg
gggcccacggcggcccgcgcgctggccgcgcgcttcggttcggttcaggcgatccgcgac
gcctcggtcgacgatctcgccgagaccgacggggtgggccgggtgatcgccgagtcggtg
ctcgactggttcaccgtcgactggcaccgcgagatcgtcgagcgctgggaggccgccggg
gtgcggatggccgacgacgcatccgaggcccctcagcaggtcctggaggggttgacggtg
gtggtcaccggctccctggagggattcacccgggatgaggccaaggaggccatcctggcg
cgaggaggcaaggcggccggctcggtgtcgaagaagaccgactacgtggtggtgggcgcc
aacgccggatcgaaggagacgaaggcccgggacctgggccgcccgatcctcgacgaggcg
gggttccgccacctccttgacaacggaccccagagggtcccgaccgtcgggtga
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