Acidocella sp. MX-AZ03: GT370_10975
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Entry
GT370_10975 CDS
T08719
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
acim
Acidocella sp. MX-AZ03
Pathway
acim03030
DNA replication
acim03410
Base excision repair
acim03420
Nucleotide excision repair
acim03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
acim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GT370_10975 (ligA)
03410 Base excision repair
GT370_10975 (ligA)
03420 Nucleotide excision repair
GT370_10975 (ligA)
03430 Mismatch repair
GT370_10975 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
acim03032
]
GT370_10975 (ligA)
03400 DNA repair and recombination proteins [BR:
acim03400
]
GT370_10975 (ligA)
Enzymes [BR:
acim01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GT370_10975 (ligA)
DNA replication proteins [BR:
acim03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GT370_10975 (ligA)
DNA repair and recombination proteins [BR:
acim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GT370_10975 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GT370_10975 (ligA)
MMR (mismatch excision repair)
DNA ligase
GT370_10975 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GT370_10975 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
RNA_ligase
Nlig-Ia
DZR_2
Motif
Other DBs
NCBI-ProteinID:
WBO57836
LinkDB
All DBs
Position
complement(1985058..1987070)
Genome browser
AA seq
670 aa
AA seq
DB search
MTDRDNFLRLLAQIEAANIAYHTQDAPTMPDAAYDALRKEAEAILAIHPEWRGDAKALQQ
VGSKPASGFKKILHRTPMLSLDNVFNAREFEEFVLRIRRFLGLKEDALEFVAEPKMDGLS
ISLVYEHHKFVRAATRGDGSEGEDVTANILTLDGLPRQLPSDAPEFIEIRGEVYMMKADF
LALNASQERQFANPRNAAAGSLRQLDPSITAKRKLSLYVYAQGETSVSVAQTHMEYLATL
RRWGFQVNPLSRLVNESGTEDFQTEIGEKRAELPYDIDGVVYKVNDLGLQNRLGFVGRAP
RWAVAWKFPAEKASTVLEDIEIQVGRTGALTPRARLKPVNVGGVLVTYATLHNEDEIERK
DLRIGDIVELHRAGDVIPQILRVLQRGEKAEPFLFPDHCPACGALAVRDDDDVVRRCTGG
LTCPAQIVERLIHFCSRAAFDIEGMGEKTISEFHEAGLLDGPPDVFKLPALESIVAKREG
WGALSAAKLSAAIEARRDMDLARFIFALGIRRIGENNAKLLAKHYGSYKIWKESMLAAQV
IGSDARLELGSISGIGPAIVHELLAFFSESHNLDTLAALEQNVRVLDAEIVGGEDSIFAG
KTVVFTGTLSIARPEAKARAEMLGAKVTDSVSKKTDYVVVGEDAGSKAKKAIELGIRILS
EQEFKELSGL
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgacagaccgagataattttctgcgtttattggcacaaattgaggccgccaatatagcc
tatcatacgcaagacgcgccgaccatgccggatgcggcgtatgacgccctgcgtaaagag
gccgaggcgatacttgcgattcatcccgaatggcgcggcgacgcgaaggcgctgcagcaa
gtcggctcaaagccggcctccggtttcaagaaaattcttcaccggacgccgatgttgtca
ttagacaatgttttcaacgcccgagaattcgaggagtttgttttaaggatcaggcgtttt
ctggggttgaaggaagatgcgcttgagttcgtcgccgaaccaaagatggatggtttgtcg
atctcccttgtgtatgagcaccacaaattcgtgcgcgcggcgacgcgcggagatggcagt
gagggtgaggacgtaacagcgaacatcttgacgctggacggcttgccgcgccaattgccg
tctgatgcgcctgagttcatcgaaatccgcggcgaagtctatatgatgaaggcggatttt
ctggcgctgaacgcctcgcaggaacgccagtttgccaacccgcgcaatgcggctgcggga
agccttcgccagttggacccgtccattacagcgaaacgaaaattgtcgctttatgtctac
gcgcagggcgaaacctcggtgtccgtggcgcaaacgcatatggagtatctggcaacgctc
cggcgttggggctttcaggtcaatccgctttcccgcctggtgaatgagagcggtactgaa
gatttccagaccgaaataggggagaagcgcgctgagctgccttacgatatcgatggtgtc
gtctataaggtgaatgatctcggcttgcaaaatcgcctaggctttgtcggtcgtgcaccg
cgttgggcggtggcgtggaaattcccggctgaaaaagcaagcacagttctggaagatata
gaaattcaggtgggaaggaccggtgccctcacgcctcgcgcccggctcaaaccggtgaat
gtcggcggcgtgctagtaacatacgcgaccctgcacaatgaagacgagatcgaacgcaag
gatctccgtattggtgatatcgtggagttgcaccgcgcgggagacgtgattcctcaaatc
ttgcgggtgctccagcgcggcgagaaagctgaacccttcctttttccagaccattgcccc
gcctgtggtgcattggctgtccgggacgatgacgacgtcgtcagacgctgtacgggaggt
ttgacctgcccggcgcaaatcgtcgaacggctcatccatttttgttcccgtgcggcgttt
gatattgaaggcatgggcgaaaagacaatcagcgaatttcatgaggcgggtttacttgat
ggaccgccggatgttttcaaattgcccgcgcttgaaagcattgtcgcgaaacgtgagggc
tggggtgcgctttcggcggccaagctgtctgcggccatcgaagcgcgccgagacatggat
ttggctcgcttcatcttcgcgcttggcatacgccgcatcggcgagaataacgccaagctt
ctggcgaagcattatggctcttacaagatatggaaagagtccatgcttgcggcacaggta
atcggctcggacgcaaggttggaattaggctcaatctccggaattggccccgcaattgtt
catgaattattggcatttttcagcgagagtcataacctggatacgctcgctgcgctggag
caaaacgtccgcgtccttgatgccgagattgtaggcggtgaggattcgattttcgccggc
aaaacggttgtttttaccgggacgctttcaatcgcgcgccctgaagccaaagcacgtgcg
gaaatgctaggagccaaggttacggattcggtttcgaaaaaaacagactatgtcgttgtc
ggtgaggacgcaggatcgaaagcgaagaaggcgatcgaattaggtatcaggatcttgtcg
gaacaggaatttaaggaactatctggcctctga
DBGET
integrated database retrieval system
