KEGG   Acidovorax sp. DW039: ACDW_25400
Entry
ACDW_25400        CDS       T10243                                 
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
aciq  Acidovorax sp. DW039
Pathway
aciq03030  DNA replication
aciq03410  Base excision repair
aciq03420  Nucleotide excision repair
aciq03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:aciq00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    ACDW_25400 (ligA)
   03410 Base excision repair
    ACDW_25400 (ligA)
   03420 Nucleotide excision repair
    ACDW_25400 (ligA)
   03430 Mismatch repair
    ACDW_25400 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:aciq03032]
    ACDW_25400 (ligA)
   03400 DNA repair and recombination proteins [BR:aciq03400]
    ACDW_25400 (ligA)
Enzymes [BR:aciq01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     ACDW_25400 (ligA)
DNA replication proteins [BR:aciq03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     ACDW_25400 (ligA)
DNA repair and recombination proteins [BR:aciq03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     ACDW_25400 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     ACDW_25400 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     ACDW_25400 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      ACDW_25400 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD PTCB-BRCT Nlig-Ia HHH BRCT_2 DUF4796_N EPSP_synthase Zn_Ribbon_TF
Other DBs
NCBI-ProteinID: BEU96835
LinkDB
Position
complement(2865293..2867380)
AA seq 695 aa
MSLLLTDPQLQAAALRQQLNAWAHQYYVLDEPTVPDAEYDRVFRELQALEAAHPDLVTPD
SPTQRVIGAVMEGLAPVRHVVPMLSIHTETDTEATGAQAFDARVRRELGLGEADPAIEYV
AEPKFDGLAMSLRYENGRLVQAATRGDGEVGEDVTHNIRTIRQIPLSLPEGVPPVLEVRG
EVYMRRADFDALNERQREQGGKTFVNPRNAAAGAVRQLDSNITAQRPLSFFAYGLGAITP
PAEGGPVFRTHYDMLQQLKAWGFPVAAQVQIAQGATELVAFHQQVGASRDALPYDIDGVV
YKVNSLQLQRDLGFKTREPRWAVAHKYPAQEMATKVEGIDVQVGRTGKLTPVARLAPVFV
GGVTVTNATLHNLFEIRKKGVRVGDQVIVRRAGDVIPEVVGVMASGPRAAYVHNFRMPRQ
CPICGSEVVREKGEANHRCTGGLFCAAQRKEAILHFAARRAMDIEGLGDKLVDQLVDANV
IRTLPDLYRLGLTSLIALERMAEKSAQNVLAALEKSKQTTLPRFLFALGIRHVGESTAKD
LARHFGLLDAIMDASVEQLLQVPDVGPVVAQSLHTFFAQPHNREVVEQLRACGVTWPEGA
PTERAPQVLSGMTIVLTGTLPTLSRDAAKEMLEAAGAKVSGSVSKKTSYVVAGEEAGSKL
TKAQELGVPVLDEAGMLALLAGQGAGQGSGQGGAA
NT seq 2088 nt   +upstreamnt  +downstreamnt
gtgtccctcttgctgactgatccgcaactccaagcagccgcgctgcgccaacagctcaac
gcctgggcgcaccagtactacgtgctggacgaacccacggtgcccgatgccgaatacgac
cgcgtgttccgcgagctgcaggcgctcgaagccgcacaccctgatctggtgacccctgat
tcccccacgcagcgcgtgattggcgcggtgatggaggggctggcacccgtgcgccacgtg
gtgcccatgctcagcatccacacagaaaccgacaccgaggccaccggagcccaggcgttt
gacgcccgcgtgcggcgcgagctggggctcggcgaggccgaccctgccatcgaatacgtg
gccgagcccaagtttgacggcctggccatgagcctgcgttacgaaaacggccgcctggtt
caggccgccacgcgcggcgatggcgaggtgggtgaggacgtgacgcacaacatccgaacc
atccgccagatacctttgagcttgcccgagggggtacccccggtgctggaggtgcgtggc
gaggtctacatgcgccgtgcggacttcgatgcgctgaacgagcgccagcgcgagcagggc
ggcaagacctttgtaaacccgcgcaacgcagcggctggtgccgtgcgccagctcgattcc
aacatcaccgcccagcggcctttgagcttttttgcctacggcctgggagccatcacgccg
cctgcagaaggggggccggtctttcgcacgcattacgacatgctgcagcagctcaaggcc
tggggttttccggtggcagcgcaggtgcagattgcgcagggtgctacggaattggtagcg
tttcaccagcaggtgggcgccagccgcgatgcgctgccgtacgacattgatggggtggtc
tacaaagtcaactcgctgcagttgcagcgtgacctgggcttcaagacccgcgagccgcgc
tgggctgtggcgcacaagtaccccgcacaggaaatggccaccaaggtggagggcattgat
gtgcaggtgggccgcaccggcaagctcacgcccgtggcgcggctggccccggtgtttgtg
ggcggggtcacggtgaccaatgccacgttgcacaacctgtttgaaatccgcaaaaaaggt
gtgcgggtgggcgatcaggtcatcgtgcggcgtgcgggcgatgtgattcctgaagtggtg
ggcgtgatggcgagcgggccgcgtgccgcctatgtccacaacttccgcatgccccggcag
tgccccatctgcggcagcgaggtggtgcgcgaaaagggcgaggccaaccaccgctgcacg
ggcggcctgttctgcgccgcgcagcgcaaggaggccatcctgcactttgccgcacgccgc
gccatggatatcgaaggcctgggcgacaagctggtggaccagctggtggatgccaacgtg
atccgcacgctgcccgatctgtatcggctgggcctgacgtcgctgatcgcgctggagcgt
atggccgaaaagtcggcgcagaacgtgctggcggcgctggaaaaatccaagcagaccacg
ctgccgcgctttctgtttgcgctgggcatccgccatgtgggggagtccaccgccaaagac
ctggcccgccactttgggctgctcgatgccatcatggacgcgagcgtggagcagctgctg
caggtgcccgatgtaggcccggtggtggcgcaaagccttcacaccttttttgcccagccg
cacaaccgcgaggtggtcgagcaactgcgggcctgtggcgtgacctggcccgaaggcgcg
cccaccgagcgtgcgccgcaggtgctcagcggcatgaccattgtgctcacgggcaccttg
cccaccctcagccgcgatgcggccaaggagatgctggaggccgccggagccaaggtgtcg
ggctcggtcagcaagaaaaccagctacgtggtggccggtgaagaggcgggcagcaagctc
accaaggcgcaggaactgggcgtgcccgtgctggacgaagcgggcatgctggccctgctg
gcgggccagggggcagggcagggctctggccaaggcggggcagcgtga

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