Acidovorax sp. DW039: ACDW_25400
Help
Entry
ACDW_25400 CDS
T10243
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aciq Acidovorax sp. DW039
Pathway
aciq03030
DNA replication
aciq03410
Base excision repair
aciq03420
Nucleotide excision repair
aciq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aciq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ACDW_25400 (ligA)
03410 Base excision repair
ACDW_25400 (ligA)
03420 Nucleotide excision repair
ACDW_25400 (ligA)
03430 Mismatch repair
ACDW_25400 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aciq03032
]
ACDW_25400 (ligA)
03400 DNA repair and recombination proteins [BR:
aciq03400
]
ACDW_25400 (ligA)
Enzymes [BR:
aciq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ACDW_25400 (ligA)
DNA replication proteins [BR:
aciq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ACDW_25400 (ligA)
DNA repair and recombination proteins [BR:
aciq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ACDW_25400 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ACDW_25400 (ligA)
MMR (mismatch excision repair)
DNA ligase
ACDW_25400 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ACDW_25400 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
DUF4796_N
EPSP_synthase
Zn_Ribbon_TF
Motif
Other DBs
NCBI-ProteinID:
BEU96835
LinkDB
All DBs
Position
complement(2865293..2867380)
Genome browser
AA seq
695 aa
AA seq
DB search
MSLLLTDPQLQAAALRQQLNAWAHQYYVLDEPTVPDAEYDRVFRELQALEAAHPDLVTPD
SPTQRVIGAVMEGLAPVRHVVPMLSIHTETDTEATGAQAFDARVRRELGLGEADPAIEYV
AEPKFDGLAMSLRYENGRLVQAATRGDGEVGEDVTHNIRTIRQIPLSLPEGVPPVLEVRG
EVYMRRADFDALNERQREQGGKTFVNPRNAAAGAVRQLDSNITAQRPLSFFAYGLGAITP
PAEGGPVFRTHYDMLQQLKAWGFPVAAQVQIAQGATELVAFHQQVGASRDALPYDIDGVV
YKVNSLQLQRDLGFKTREPRWAVAHKYPAQEMATKVEGIDVQVGRTGKLTPVARLAPVFV
GGVTVTNATLHNLFEIRKKGVRVGDQVIVRRAGDVIPEVVGVMASGPRAAYVHNFRMPRQ
CPICGSEVVREKGEANHRCTGGLFCAAQRKEAILHFAARRAMDIEGLGDKLVDQLVDANV
IRTLPDLYRLGLTSLIALERMAEKSAQNVLAALEKSKQTTLPRFLFALGIRHVGESTAKD
LARHFGLLDAIMDASVEQLLQVPDVGPVVAQSLHTFFAQPHNREVVEQLRACGVTWPEGA
PTERAPQVLSGMTIVLTGTLPTLSRDAAKEMLEAAGAKVSGSVSKKTSYVVAGEEAGSKL
TKAQELGVPVLDEAGMLALLAGQGAGQGSGQGGAA
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
gtgtccctcttgctgactgatccgcaactccaagcagccgcgctgcgccaacagctcaac
gcctgggcgcaccagtactacgtgctggacgaacccacggtgcccgatgccgaatacgac
cgcgtgttccgcgagctgcaggcgctcgaagccgcacaccctgatctggtgacccctgat
tcccccacgcagcgcgtgattggcgcggtgatggaggggctggcacccgtgcgccacgtg
gtgcccatgctcagcatccacacagaaaccgacaccgaggccaccggagcccaggcgttt
gacgcccgcgtgcggcgcgagctggggctcggcgaggccgaccctgccatcgaatacgtg
gccgagcccaagtttgacggcctggccatgagcctgcgttacgaaaacggccgcctggtt
caggccgccacgcgcggcgatggcgaggtgggtgaggacgtgacgcacaacatccgaacc
atccgccagatacctttgagcttgcccgagggggtacccccggtgctggaggtgcgtggc
gaggtctacatgcgccgtgcggacttcgatgcgctgaacgagcgccagcgcgagcagggc
ggcaagacctttgtaaacccgcgcaacgcagcggctggtgccgtgcgccagctcgattcc
aacatcaccgcccagcggcctttgagcttttttgcctacggcctgggagccatcacgccg
cctgcagaaggggggccggtctttcgcacgcattacgacatgctgcagcagctcaaggcc
tggggttttccggtggcagcgcaggtgcagattgcgcagggtgctacggaattggtagcg
tttcaccagcaggtgggcgccagccgcgatgcgctgccgtacgacattgatggggtggtc
tacaaagtcaactcgctgcagttgcagcgtgacctgggcttcaagacccgcgagccgcgc
tgggctgtggcgcacaagtaccccgcacaggaaatggccaccaaggtggagggcattgat
gtgcaggtgggccgcaccggcaagctcacgcccgtggcgcggctggccccggtgtttgtg
ggcggggtcacggtgaccaatgccacgttgcacaacctgtttgaaatccgcaaaaaaggt
gtgcgggtgggcgatcaggtcatcgtgcggcgtgcgggcgatgtgattcctgaagtggtg
ggcgtgatggcgagcgggccgcgtgccgcctatgtccacaacttccgcatgccccggcag
tgccccatctgcggcagcgaggtggtgcgcgaaaagggcgaggccaaccaccgctgcacg
ggcggcctgttctgcgccgcgcagcgcaaggaggccatcctgcactttgccgcacgccgc
gccatggatatcgaaggcctgggcgacaagctggtggaccagctggtggatgccaacgtg
atccgcacgctgcccgatctgtatcggctgggcctgacgtcgctgatcgcgctggagcgt
atggccgaaaagtcggcgcagaacgtgctggcggcgctggaaaaatccaagcagaccacg
ctgccgcgctttctgtttgcgctgggcatccgccatgtgggggagtccaccgccaaagac
ctggcccgccactttgggctgctcgatgccatcatggacgcgagcgtggagcagctgctg
caggtgcccgatgtaggcccggtggtggcgcaaagccttcacaccttttttgcccagccg
cacaaccgcgaggtggtcgagcaactgcgggcctgtggcgtgacctggcccgaaggcgcg
cccaccgagcgtgcgccgcaggtgctcagcggcatgaccattgtgctcacgggcaccttg
cccaccctcagccgcgatgcggccaaggagatgctggaggccgccggagccaaggtgtcg
ggctcggtcagcaagaaaaccagctacgtggtggccggtgaagaggcgggcagcaagctc
accaaggcgcaggaactgggcgtgcccgtgctggacgaagcgggcatgctggccctgctg
gcgggccagggggcagggcagggctctggccaaggcggggcagcgtga
DBGET
integrated database retrieval system