Actinomadura citrea: OG979_07440
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Entry
OG979_07440 CDS
T09741
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
acir
Actinomadura citrea
Pathway
acir03030
DNA replication
acir03410
Base excision repair
acir03420
Nucleotide excision repair
acir03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
acir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OG979_07440 (ligA)
03410 Base excision repair
OG979_07440 (ligA)
03420 Nucleotide excision repair
OG979_07440 (ligA)
03430 Mismatch repair
OG979_07440 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
acir03032
]
OG979_07440 (ligA)
03400 DNA repair and recombination proteins [BR:
acir03400
]
OG979_07440 (ligA)
Enzymes [BR:
acir01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
OG979_07440 (ligA)
DNA replication proteins [BR:
acir03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
OG979_07440 (ligA)
DNA repair and recombination proteins [BR:
acir03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
OG979_07440 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OG979_07440 (ligA)
MMR (mismatch excision repair)
DNA ligase
OG979_07440 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
OG979_07440 (ligA)
BRITE hierarchy
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
HHH
HHH_8
HMBD
Motif
Other DBs
NCBI-ProteinID:
WUR53775
LinkDB
All DBs
Position
complement(1575029..1577197)
Genome browser
AA seq
722 aa
AA seq
DB search
MTMSDGVPTEARQRHKELSERLDEANYRYYVLDQPTLSDAEYDRMMRDIHALEERHPELV
TPDSPTQRVGAPIVTDFATVRHLERMQSLDNAMSADELLAWDERVVKEVGEVAGYLCELK
IDGLAIALTYENGRLTRGVTRGDGRTGEDVTNNVRTIADIPSRLAGDGWPDVLEVRGEVF
LPVEGFEQVNAVQIEAGKEPFANPRNAAAGSLRQKDPRVTAHRPLGMLVHGFGAWRGGKQ
PDSQSGAYELMRGWGLPASDRYKVVGGLAAVREYIEEYGEDRHGTAYEIDGVVVKVDQFA
LQRRLGSTSRAPRWAIAWKYPPEEVNTKLLDIKVGVGRTGRVTPYGVMEPIKVAGSTVER
ATLHNASEVRRKGVLIGDTVVLRKAGDVIPEIVAPVTGLRDGSEREFVMPGTCPECGTEL
AYEKEGDVDIRCPNAESCPGQLRERLFYLASRKVLDIEALGYVAATALTQPLEPSDPPVK
NEGDLFHITVDQLLPIRSLVLDQRTGTTKTDPKTGEPKVVSFFANKEGEPKKTVEILFEE
LEKAKRQPLWRVLVALSIRHVGPSAAQDLAREMRSLDAIAEATEEELAAVDGVGPTIAAS
IKKWFEEPWHREIVDKWRAAGVRMEDEGAAGPRPLEGVTVVITGSLEGFSRDSATEAVQR
LGGKVSGSVSKKTGFVVVGDSPGSKYDKAVKLGVPVLAEDGFRVLLSDGPDAAKNVTMRA
DA
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atgaccatgagcgacggcgttccgaccgaggcgcggcagcgccacaaggagctgagcgag
cggctcgacgaggccaactaccggtactacgtcctcgaccagccgacgctctccgacgcc
gagtacgaccggatgatgcgcgacatccacgcgctggaggagcggcatccggagctggtc
acgcccgactcgccgacgcagcgggtcggcgcgcccatcgtcaccgacttcgcgaccgtc
cggcacctggagcggatgcagagcctggacaacgcgatgagcgccgacgagctgctcgcc
tgggacgagcgggtcgtcaaggaggtcggcgaggtcgccggctacctgtgcgaactgaag
atcgacggcctggcgatcgcgctgacctacgagaacgggcggctcacgcgcggggtcacc
cgcggcgacggccgcaccggcgaggacgtcaccaacaacgtgcgcaccatcgccgacatc
ccgagccggctggccggcgacggctggcccgacgtgctggaggtccgcggcgaggtcttc
ctgccggtcgaggggttcgagcaggtcaacgcggtccagatcgaggcgggcaaggagccc
ttcgccaacccccgcaacgcggcggcgggctcgctgcggcagaaggacccgcgcgtcacc
gcgcaccggccgctcggcatgctcgtccacgggttcggcgcgtggcggggcgggaagcag
cccgacagccagtccggcgcgtacgagctgatgcgcggctgggggctgccggccagcgac
cgctacaaggtcgtcggcgggctcgccgccgtccgcgagtacatcgaggagtacggcgag
gaccggcacggcaccgcctacgagatcgacggggtcgtcgtcaaggtcgaccagttcgcg
ctgcagcggcggctcgggtccacgagccgggcaccgcgctgggcgatcgcgtggaagtac
ccgccggaggaggtcaacaccaagctcctcgacatcaaggtcggagtgggacggaccggg
cgcgtcaccccctacggggtgatggagccgatcaaggtcgccgggtccacggtcgagcgg
gcgacgctgcacaacgcgagcgaggtcaggcgcaagggcgtgctgatcggcgacacggtc
gtcctgcgcaaggcgggcgacgtcatccccgagatcgtcgcgccggtgacggggctgcgc
gacgggtccgagcgcgagttcgtcatgcccggcacctgccccgagtgcgggaccgagctg
gcgtacgagaaggagggcgacgtcgacatccgctgcccgaacgccgagagctgccccggc
cagctgcgcgagcggctgttctacctggcgagccgcaaggtgctcgacatcgaggcgctc
gggtacgtcgcggcgaccgcgctcacccagccgctggagccgagcgacccgccggtcaag
aacgagggcgacctgttccacatcaccgtcgaccagctgctcccgatcaggagcctcgtc
ctcgaccagcggaccggcacgaccaagaccgacccgaagaccggcgagccgaaggtcgtg
tcgttcttcgccaacaaggagggcgagccgaagaagacggtcgagatcctcttcgaggag
ctggagaaggccaagcggcagcccctgtggcgggtgctggtggcgctgtcgatccggcac
gtggggccgtccgccgcccaggacctcgcgcgcgagatgcgctcgctggacgcgatcgcc
gaggcgacggaggaggagctcgccgcggtcgacggcgtcgggcccaccatcgcagcgtcg
atcaagaagtggttcgaggagccctggcaccgcgagatcgtcgacaagtggcgggccgca
ggggtccggatggaggacgagggcgccgcgggcccgcgcccgctggagggcgtcaccgtc
gtgatcaccggatcgctggaggggttcagccgcgactcggcgaccgaggcggtgcagcgg
ctcggcgggaaggtgtccggctcggtgtcgaagaagacgggcttcgtggtcgtcggcgac
agtccagggtcgaaatacgacaaggcggtcaagttgggcgtgccggtcctggccgaggac
gggttccgggtcctgctctccgatgggccagatgcggccaaaaacgtaactatgcgcgcc
gacgcctaa
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