Arthrobacter citreus: HPK19_19805
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Entry
HPK19_19805 CDS
T06606
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
acit
Arthrobacter citreus
Pathway
acit03030
DNA replication
acit03410
Base excision repair
acit03420
Nucleotide excision repair
acit03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
acit00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HPK19_19805 (ligA)
03410 Base excision repair
HPK19_19805 (ligA)
03420 Nucleotide excision repair
HPK19_19805 (ligA)
03430 Mismatch repair
HPK19_19805 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
acit03032
]
HPK19_19805 (ligA)
03400 DNA repair and recombination proteins [BR:
acit03400
]
HPK19_19805 (ligA)
Enzymes [BR:
acit01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HPK19_19805 (ligA)
DNA replication proteins [BR:
acit03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HPK19_19805 (ligA)
DNA repair and recombination proteins [BR:
acit03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HPK19_19805 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HPK19_19805 (ligA)
MMR (mismatch excision repair)
DNA ligase
HPK19_19805 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HPK19_19805 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
RNA_pol_A_CTD
5_3_exonuc
HHH_8
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
QKE74831
LinkDB
All DBs
Position
4116458..4118458
Genome browser
AA seq
666 aa
AA seq
DB search
MDQKIIDKVEELRTKLNQYNYEYYVLDQPSVPDAEYDLVLHELIGLEEQYPEILTPDSPS
QRVGGQAIDLFEKVVHSHPMLSLGNAFNEGDLKDFDQRIRQDTQIVSYVCELKIDGLAVS
LQYENGLFVKGATRGDGTVGEDITHNLKTIKAIPLRLSEPITIEARGEAFMPKASFEKVN
ELREKNGEELFANPRNAAAGSLRQLDPKIVAKRDLSFFVYGFPTAAEFSIEKHSEALDYL
QKLGFKTNTFRKTCHTIDEVIEYVEEWKEKRPSLPYEIDGIVIKVDEYSTQNKLGSTAKV
PRWAIAFKFPAEEVVTKLVDIELSVGRTGVVTPTAILEPVRVAGTVVKRASLHNEDLIKE
KDIRIGDTVVIRKAGDIIPEVVNVLLDRRTGDEQPFEMPTHCPSCDHDLIRVPGEVALRC
VNPFCPSQIREGLIHFASRDAMNIEGLGERVVAQLFDANLIKTFTDLYLLTKEQLLALER
FGEKSADKLVSAIQTSKDNSLEKLLFGLGIRHVGAKAAKTLAQHFQTIDHIMEASVEELT
GINEIGSKMAQSISDYFSQDEVKELISTFKSVGVNTEYKGIQVENINMDSLFAGKTVVLT
GKLEQMTRSEAKKQLEALGAKVAGSVSKSTDLVIAGEAAGSKLDAARKLNIEVWDEERMI
KELQPQ
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atggatcaaaaaatcattgataaagttgaggaactaagaacaaaattaaatcaatacaac
tatgagtattacgtattagatcagccttcagtgccagatgccgaatatgacttagtatta
catgaattaatcggattagaggaacaatatcctgaaattttaacgccggattctccttct
caacgtgttggtggacaggcaattgatctatttgaaaaagtcgttcatagtcatccaatg
ttaagcttaggtaatgcgtttaatgaaggtgatttaaaggatttcgatcaaagaattaga
caggatacacaaatagtatcttatgtttgtgaattgaaaatagatggtttagcagtttca
ttacaatatgaaaatggattgtttgttaaaggtgcaactcgtggagacggtacagtagga
gaagatattactcataacttaaagacgattaaagccattccattaagactttctgaacct
atcacaatcgaagctcgtggtgaggcattcatgccaaaagctagctttgaaaaggtaaat
gaattacgtgagaaaaatggagaagaattatttgctaatcctagaaatgcagcggcaggt
tcacttcgccagttagatcctaaaattgttgcaaagagggatttatcattttttgtttac
ggatttcctacggcagcagaattttcaattgaaaaacacagtgaagcattagattattta
caaaagctaggatttaaaactaatacattccgtaaaacttgtcatacaattgatgaagta
attgaatatgttgaggaatggaaagaaaaacgtccatcattaccttatgaaatagatgga
atcgttataaaagtggatgaatatagtacccagaataaattaggatcaacggctaaagtg
ccgagatgggctattgcattcaagttcccagctgaagaggtagttacaaagttagtagat
atcgaattaagtgtagggcgtacaggagtagtaacaccaactgctatattagagccagtt
cgagttgcaggtacggtcgttaagcgcgcatcgctccataatgaagatttaattaaggaa
aaagacattcgaattggcgacacagttgttattcgtaaggcgggagacattattccagaa
gtagtaaatgtgttattagatcgccgtactggtgatgagcagccttttgaaatgccaact
cactgtccttcatgtgatcatgacttaataagggtgccaggtgaagttgcactgcgttgt
gtaaacccgttttgcccgtctcagattcgtgaaggattaattcattttgcgtctcgagat
gctatgaatattgaaggtttaggagagcgagtagtcgctcaattattcgatgcaaactta
attaaaacttttacagatctttatcttcttacaaaagaacagttattggcattggaacga
tttggagaaaagtcagcggataaattagtatctgcaatacaaacttcaaaagacaattca
cttgaaaaactattgttcggattagggattcgccatgttggagctaaggcagcaaaaacg
ttggctcagcatttccaaacaatcgatcatattatggaagcctcagttgaagaattaaca
ggaattaatgaaattggttcaaagatggcacagtcaattagtgattatttttcacaagac
gaagtaaaagaactaatttcaacatttaaatctgttggcgtaaatactgaatataaagga
attcaagtagaaaatattaatatggattctctttttgctggtaaaacagtagtattaact
ggtaagctagaacagatgactagaagtgaagctaaaaagcaattagaagcacttggtgca
aaagttgctggaagtgttagtaagagcactgatttagttattgcgggtgaggcagctggt
tcgaaattagatgctgctcgtaaattaaatatcgaggtttgggatgaagagagaatgatt
aaagagcttcaaccacaataa
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