Acidithiobacillus sp. YTS05: MQE22_07775
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Entry
MQE22_07775 CDS
T08616
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aciy
Acidithiobacillus sp. YTS05
Pathway
aciy03030
DNA replication
aciy03410
Base excision repair
aciy03420
Nucleotide excision repair
aciy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aciy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MQE22_07775 (ligA)
03410 Base excision repair
MQE22_07775 (ligA)
03420 Nucleotide excision repair
MQE22_07775 (ligA)
03430 Mismatch repair
MQE22_07775 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aciy03032
]
MQE22_07775 (ligA)
03400 DNA repair and recombination proteins [BR:
aciy03400
]
MQE22_07775 (ligA)
Enzymes [BR:
aciy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MQE22_07775 (ligA)
DNA replication proteins [BR:
aciy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MQE22_07775 (ligA)
DNA repair and recombination proteins [BR:
aciy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MQE22_07775 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MQE22_07775 (ligA)
MMR (mismatch excision repair)
DNA ligase
MQE22_07775 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MQE22_07775 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
DNA_ligase_ZBD
BRCT
HHH
PTCB-BRCT
5_3_exonuc
RNA_pol_A_CTD
BRCT_2
PADR1_Zn_ribbon
Motif
Other DBs
NCBI-ProteinID:
UTV79929
LinkDB
All DBs
Position
complement(1564450..1566468)
Genome browser
AA seq
672 aa
AA seq
DB search
MDDEASRLRIEELRSLLQQANQAYYQNDAPILSDAEYDRLLRELGQLEERYPQWRRPDSP
TQRVGAAPVSAFASVAYRIPMLSLDNVFDAEGFAAWWNRLERGLGDGQAIRLSAEPKFDG
LSLNLRYEGGELVAAGTRGDGVHGEDVTHNARTIRNLPLRLAGEGWPDLLEVRGEVVIPS
AAFVRLNQEREENGDAPFANPRNAAAGSLRQLDPRITARRPLAFFPWGWGESSASLGNSH
LAILQRLQDWGFALLHDLLRPIDSLQAAEDYQREMAGRRDHLAFEIDGLVFKLDDLNARE
RLGFTARAPRWAIAYKFPAHEETTVVQDIVASVGRTGVITPVAVLAPVEVAGVIVSRASL
HNLDEVRRKDVHIGDTVLIRRAGDVIPELVQVLLDRRPEAAAEWQMPRHCPVCGSEVLRL
GDEVAYRCTGGLFCPAQRVGALLHFASRKAMDIRGLGEKLTQHLVDSGVVRTVADLYRLD
IDTLMKMERMGRRSAEKLLAELTNSKDTTLPRFLYALGIPQVGETTARALAEQFGDLSEL
MAAGEETLQTVPDVGPVVAQAVAHFFAQSHNQEVIRALLAAGIHWPAPAAPQGGIWSGKQ
FVLTGTLERWTRDEAKAEIEKRGGKIVSAVSQKTDYLVVGKSPGSKLAQAEKYGIPILGE
EEFANALRQQAE
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
gtggatgacgaagcttcccgtttgcggatcgaagaactgcgctccttgctgcagcaggcc
aatcaggcctattaccagaacgatgcccccatactgagtgatgcagagtacgatcgtctc
ttgcgcgagctggggcagctagaggaacgctatccgcagtggcgccgcccagattcgccc
acgcaacgggtgggtgcggccccggtcagcgcctttgccagcgtcgcatatcgcataccg
atgctgtcattggacaatgtcttcgatgccgagggctttgccgcctggtggaacaggctg
gagcgcgggctgggggatggccaagcgatccgcctcagtgccgagcccaaattcgatggc
ctctcccttaacctgcgctacgagggaggggagttggtggctgcgggtacccgtggcgat
ggcgtgcatggtgaagacgtaacccacaacgcccgcaccattcgcaatctccccttgcgt
ctggcgggggagggctggccggatctgctggaggtacgcggcgaggtcgtcattcccagc
gccgcctttgtgcgcctgaatcaggaacgcgaggaaaatggtgacgctcccttcgccaac
ccacgcaatgcggcggccggcagtctccgacagctcgatccgcgcattactgcgcgccgt
cctctggccttttttccttggggctggggcgaaagctctgcctcgcttgggaacagccat
ctcgccattttgcagcgtctacaggattggggctttgcgctgctgcatgatctgctccga
ccgatagacagcctgcaggctgccgaagactaccagcgagagatggccgggcgacgggat
catctggcttttgaaatcgacggtctcgtcttcaagctggacgatctcaacgcgcgcgag
cgcctcggctttactgcccgggcgccacgctgggcgattgcctacaagtttcccgcccac
gaagagaccacggtggtgcaggatattgtcgcttcggttgggcgcaccggcgtaatcacc
cccgtggcggttttagcgccggtagaggttgcgggagtgatcgtcagtcgcgcctcactg
cacaatctggatgaagtgcgtcgcaaagacgtgcatattggtgatacggtgctgatccgc
cgcgccggtgacgtgatccccgaactggtgcaggtcctgctcgatcgtcgtcccgaggct
gcagccgaatggcagatgcccagacactgccccgtctgcggctcagaagtcctgcggctc
ggtgacgaggtcgcctatcgctgtacaggggggctgttttgtccggcgcagcgagtcggt
gcgctgctgcattttgcctcgcgcaaggcgatggacattcgcgggctgggggaaaaactg
acgcagcatttggtggattccggagtcgtgcgcactgtcgctgacctctaccgtctcgat
atcgatacgctgatgaaaatggagcgcatgggtcggcgctcggcggaaaagctcctggcg
gagctgaccaacagcaaagacacgaccctgccgcgttttctctatgctctgggtattccc
caggtgggcgagaccacagcacgagccctggccgagcagtttggtgatttgtccgagctg
atggccgcaggtgaagagacgttacagactgtaccagatgttggcccggtggtcgctcag
gccgtcgcccactttttcgcgcagagtcacaatcaggaagtcattcgtgctctgctagcc
gccggcatccactggccagcaccggcagccccacagggcggtatctggagtggcaagcaa
ttcgttctgacgggaacgctggagcgctggacgcgcgacgaggccaaggcggagatcgag
aaacgcggaggaaagatcgtatcagcggtttcccaaaagaccgactacctggttgttggc
aaaagtccgggcagcaagctggcgcaggccgaaaagtatggcattccgatcctgggggag
gaggagttcgctaacgccttgcggcaacaggcggaatag
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integrated database retrieval system
