Aminobacterium colombiense: Amico_1375
Help
Entry
Amico_1375 CDS
T01202
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aco
Aminobacterium colombiense
Pathway
aco03030
DNA replication
aco03410
Base excision repair
aco03420
Nucleotide excision repair
aco03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Amico_1375
03410 Base excision repair
Amico_1375
03420 Nucleotide excision repair
Amico_1375
03430 Mismatch repair
Amico_1375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aco03032
]
Amico_1375
03400 DNA repair and recombination proteins [BR:
aco03400
]
Amico_1375
Enzymes [BR:
aco01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Amico_1375
DNA replication proteins [BR:
aco03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Amico_1375
DNA repair and recombination proteins [BR:
aco03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Amico_1375
NER (nucleotide excision repair)
GGR (global genome repair) factors
Amico_1375
MMR (mismatch excision repair)
DNA ligase
Amico_1375
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Amico_1375
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
RNA_pol_A_CTD
POLH-Rev1_HhH
DUF6217
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
ADE57492
UniProt:
D5EG10
LinkDB
All DBs
Position
complement(1403501..1405555)
Genome browser
AA seq
684 aa
AA seq
DB search
MDRREALQRIEALREEINRHAHLYYVLDTPEIADHEYDALFRELASLEEAFPEFDDPDSP
THRVGGAPLDRFEKVIHESPLLSLDNALSKEEVWSFCDRVFSGLGLGNLEYLCELKIDGL
AVSLIYEDGVFIRGATRGDGLVGEDVTANLRTIRSLPLRLREKVSGRMEVRGEVLMTREQ
FAALNQEREEGGELLFANPRNAAAGSLRQLDSSITASRKLSIFLYYVAHPQEHGLRTQQE
VLHWLQHLGFPVQSAWGVCSTRQDIDAFIEEWREKRLSLPYSTDGVVLKINQVDFWEDLG
TTAKAPRWAIAFKYPPEEKTSRILDIEVSVGRTGTLTPVAHLEPVHLAGTVVRRASLHNE
DEIRRKDIRIKDKVVVRKAGEIIPEVVRVLTEGRDGNEVEFQMPDTCPACGSHVMRIPGE
VALRCPNRASCPAQLREGIAHFASRAAMDIRGLGDKLITQLVDRQLIRNMADLYTLKRED
LLSLDRMGEKSASNLLEALSVSKNRFLSNLITALGIRLVGKKVAEILADRFHSLDALSSA
QEEGLSSIDGVGPKIAASIKAFFDDEANKEMISRLKDAGVRVVEEKSMSSVEGPLEDQRF
VFTGELQSMSRGEAEALVKNLGGASSSSVSKKTSIVVAGPGAGSKLQKARELGITIINEE
EFLQMIRPYERVFSKHTDSIEKEE
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
gtggatcggagggaagctctgcaacgtatcgaagctctgcgggaagaaatcaatcgccat
gcccatctctactatgttctcgataccccggaaatagcagaccatgagtatgatgctctc
ttcagggaattggcctctttagaagaagctttccctgaatttgacgatcctgattctccc
acacaccgcgttggaggagccccccttgaccgtttcgagaaagtgattcatgagagcccc
cttctcagccttgataatgctttgtctaaagaagaggtatggtcgttctgtgaccgtgtc
ttttctgggttgggacttggcaatctggagtatctttgcgaactgaaaatagatggtttg
gctgtttctcttatttatgaggatggtgtttttatccggggagccactcgcggcgatggg
ctggtaggggaagatgtaacggcaaacttgagaacgatccgttctttgcctctccgtctc
agagagaaggtttcgggccgcatggaagtccgcggagaagtgctgatgacgagggaacag
tttgcggcgttgaaccaggaacgggaagaagggggagagctccttttcgctaatccgaga
aatgccgcagccgggagccttcgtcagcttgactcgtcaattacagcgtcgagaaaactc
tcaatctttctctattatgtagcccatccccaggagcatggattacggacccagcaagag
gttctccattggcttcagcatttgggatttccagtgcagagtgcatggggagtatgcagc
acacggcaggatattgacgcatttatagaggagtggcgggaaaagcgactctccctgccc
tatagtactgatggtgtagttctgaagattaatcaggttgatttctgggaagatctgggc
accacagcaaaagctcctcgctgggctattgcttttaaatatccgccagaggaaaaaaca
agcagaatcctcgatatagaggtttctgtgggccgcacagggactctcactccagtggcc
cacctcgaaccggtccatcttgccggaactgtagtgagaagggccagcttgcataatgag
gatgaaattcgcagaaaagatattcgcataaaagataaagtagttgttcgtaaagcaggt
gagatcatcccggaagtggtaagggttctgacagagggacgggatggaaatgaagttgag
ttccagatgcctgatacatgtcctgcctgcggatcccatgtcatgcgaatccctggtgaa
gttgccctgcggtgtcctaacagggcgtcgtgcccggcccagcttcgtgaaggaattgct
cattttgcttcaagagcagccatggacattcgtggactgggagataaactaattacgcag
cttgtagacaggcagcttattaggaacatggctgacctttacacgttgaagcgtgaagac
ttgctttccctggatagaatgggggagaaatctgcttcaaacctgttggaagctttgagt
gtttctaagaacagatttctttcaaatctcataacggctctgggaattcgtcttgtcggg
aaaaaagtggcagaaatacttgccgatcgtttccatagccttgatgctttatcgtcagcc
caggaagagggactttcttctatagatggggttggtcccaagatagcggcttctataaag
gctttttttgacgatgaagcgaacaaagagatgatttcgcgccttaaggacgctggagtt
agggtggtagaagaaaaaagcatgtcaagcgtggagggtcccctcgaagaccagcgtttt
gtttttacaggtgaacttcaatccatgtccaggggagaggctgaagcccttgtaaagaac
cttggaggggcgagttcatccagtgtaagcaagaaaacgtcgatagtggtggctggtcca
ggtgctggcagcaagctgcagaaagccagggaacttggcataaccattataaatgaggaa
gagttcttacaaatgatccgcccttacgagagggtattttcgaaacatacggatagtatt
gagaaggaggagtga
DBGET
integrated database retrieval system
