KEGG   Alterisphingorhabdus coralli: RB602_07215
Entry
RB602_07215       CDS       T10589                                 
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
acoa  Alterisphingorhabdus coralli
Pathway
acoa03030  DNA replication
acoa03410  Base excision repair
acoa03420  Nucleotide excision repair
acoa03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:acoa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    RB602_07215 (ligA)
   03410 Base excision repair
    RB602_07215 (ligA)
   03420 Nucleotide excision repair
    RB602_07215 (ligA)
   03430 Mismatch repair
    RB602_07215 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:acoa03032]
    RB602_07215 (ligA)
   03400 DNA repair and recombination proteins [BR:acoa03400]
    RB602_07215 (ligA)
Enzymes [BR:acoa01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     RB602_07215 (ligA)
DNA replication proteins [BR:acoa03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     RB602_07215 (ligA)
DNA repair and recombination proteins [BR:acoa03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     RB602_07215 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     RB602_07215 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     RB602_07215 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      RB602_07215 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 DNA_ligase_ZBD BRCT PTCB-BRCT Nlig-Ia zf-C2H2_assoc
Other DBs
NCBI-ProteinID: WOE76495
UniProt: A0AA97FCF3
LinkDB
Position
1519900..1522110
AA seq 736 aa
MTELSTLSEADAANELMRLAKAIAHHNKLYHAEDSPEISDAEYDALVKRNTALEEAFPHL
VREDSPSKQVGAAVATSPLSKVTHAKRLYSLDNGFSDEDIADWLARVRRYLNLAEDAPVA
VTAEDKIDGLSCSLRYEKGELVLAATRGDGLVGEDVTANVRTIAEIPQTLSPLPFRGGVG
GGGVQQAPGQDDSPHPNPSPKGEGLYEIPDIFEIRGEIYMAKEDFTALNERQEAAGEKVF
ANPRNAAAGSLRQKDPSVTASRPLKFWAHGWGEASTVPGETQMQVIQAIQSWGVPVSPLL
KRFETLKDLLAHYRSIETQRAELPYDIDGVVYKVDRLDWQERLGFVAKAPRWALAHKFPA
ERAETTLEAIDIQVGRTGKLTPVGRLTPVTVGGVVVSNVTLHNRDEIARLDLRPGDRVVV
QRAGDVIPQVVENATLRDVDSSQKDMNGNRKDATDSYIFPDRCPECGSEAVAEEGEVDVR
CTGGLICPAQRFQRLVHFVSRGALDIDGLGEKSIEEFIGYGWLASPADIFRLKTHREALL
AKDGWQDKSVDNLLAAVENKRAPDAARLLFGLGIRHIGATTSRDLIRNFRNMGAIADIGH
KIAEGDEEAIAEVMAIDGIGPTVARALGDFFHEPHNVAAWDDLMDEVSPPDFVDDRKQTE
WTGKTIVFTGKLETMSRDEAKAQAERLGAKAAGSVSAKTDLLVAGPGAGSKLKKAQELGI
KTTDEAGWAEIVAAAD
NT seq 2211 nt   +upstreamnt  +downstreamnt
atgaccgaactttcaaccctctccgaagccgatgccgccaatgaactgatgcggctggcc
aaggcgattgcgcatcacaacaaactctaccatgctgaggactcaccggaaatatccgac
gctgaatatgatgcgctggtgaagcgcaacaccgcgctggaagaggcatttccgcatctg
gtgcgtgaggatagcccgagcaaacaggtcggcgctgcggtggcgacgtcgccgctgtcc
aaagtcacccatgccaagcgcttgtacagtctcgataatggcttttccgatgaggatatc
gccgactggctggcccgggtgcggcgttatctcaatctcgccgaggatgcgccggtagcg
gtgacggcggaggacaagattgacggcctgtcctgctcgttgcgctatgaaaagggcgag
ctggtgctggcggcaacgcgtggtgatggcctggtgggggaggatgtaaccgccaatgtg
cggacgatagcggagataccgcaaactctctctcccctcccctttaggggaggggtcggg
ggtgggggtgttcaacaagcgccaggccaagacgatagcccccaccccaacccctcccct
aaaggggaggggctttatgaaattcccgacatcttcgagatccgtggtgaaatctatatg
gcgaaagaggatttcaccgcgctcaacgagcggcaggaagcggcgggcgagaaggtcttt
gccaatcctcgcaatgctgctgctggttcattacgccagaaagacccaagcgtcaccgca
tcgcgtccgctaaaattctgggcccatggttggggtgaggcgagcaccgttcccggcgag
acccagatgcaggtgatacaggcaatccagagctggggcgtgccggtctcgcctttgctt
aaacgcttcgaaaccctgaaagacctactcgcgcattatcgcagcattgagacgcaacgc
gctgaattgccttatgatattgacggtgtggtctacaaagtggaccggctcgactggcag
gagcggctgggttttgtcgccaaggcaccgcgctgggcgctggcgcataaattccctgcc
gagcgcgccgagacaacgctggaagccatcgatattcaggtcggtcgcaccggcaagctg
acgccggtcgggcgactgacgccggtcacggtcggcggtgtggtcgtctccaatgtcacg
ctgcataatcgcgatgagattgcgcggctggatctccgccccggtgatcgcgtggtggtc
caacgcgctggcgatgtgatcccgcaggtggtagagaacgccacgctaagggacgtggat
agcagtcagaaggacatgaatggcaaccgaaaggacgccactgacagctatatattcccc
gatcgctgccccgaatgtggctcggaagcggtggctgaagaaggtgaagtcgatgttcgc
tgcaccggtggtctgatctgcccggcccagcgtttccagcgactggtgcattttgtgtca
cgcggcgcgctcgatattgatggactgggcgagaagagcattgaggaatttatcggctat
ggctggctcgccagcccggcggatatttttcggctgaaaacccatcgcgaggcgctgctg
gcgaaagatggctggcaggacaagtctgtggataatctgttggcagcggtggaaaacaaa
cgcgcgcccgatgcggcgcggctgctgttcggccttggcatccgccatatcggcgcgaca
acatcgcgtgacttaatccgtaatttcagaaacatgggcgcgatagccgatattggtcat
aagatcgctgaaggcgatgaagaggcgattgccgaggttatggcgattgacggcatcggc
ccgacagtagcgcgcgccctgggcgatttcttccatgaaccgcataatgttgccgcctgg
gatgatctgatggatgaggtgtcaccgcccgactttgtcgatgatcgcaagcagaccgaa
tggaccggcaaaacgatcgtctttaccggcaagctggaaaccatgagccgcgatgaagcc
aaggcccaggccgagcgtctcggcgccaaggcggcgggcagtgtctcggctaagaccgat
ctgctggtagcggggccgggcgccggttccaagctcaaaaaagcgcaggaactgggaata
aagaccacggatgaagccggctgggcggagattgttgcggcggcggattaa

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