Candidatus Andeanibacterium colombiense: P0Y56_02755
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Entry
P0Y56_02755 CDS
T09799
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
acob
Candidatus Andeanibacterium colombiense
Pathway
acob03030
DNA replication
acob03410
Base excision repair
acob03420
Nucleotide excision repair
acob03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
acob00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
P0Y56_02755 (ligA)
03410 Base excision repair
P0Y56_02755 (ligA)
03420 Nucleotide excision repair
P0Y56_02755 (ligA)
03430 Mismatch repair
P0Y56_02755 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
acob03032
]
P0Y56_02755 (ligA)
03400 DNA repair and recombination proteins [BR:
acob03400
]
P0Y56_02755 (ligA)
Enzymes [BR:
acob01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
P0Y56_02755 (ligA)
DNA replication proteins [BR:
acob03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
P0Y56_02755 (ligA)
DNA repair and recombination proteins [BR:
acob03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
P0Y56_02755 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
P0Y56_02755 (ligA)
MMR (mismatch excision repair)
DNA ligase
P0Y56_02755 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
P0Y56_02755 (ligA)
BRITE hierarchy
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
WEK47220
LinkDB
All DBs
Position
complement(567815..569920)
Genome browser
AA seq
701 aa
AA seq
DB search
MADLTEAEAANQLMRLAKEIARHNALYHAQDEPEITDQEFDALVRRNSELEAQFPQLIRA
DSPSKQVGAAASSSALTKVPHEVRMFSLDNAFSDEDMSDFFARVRRFLNLPEGETVAYTA
EDKIDGLSCSLRYEDGVLVRAATRGDGLVGEDVTANVRHIADIPEMLHGDAPAVFEVRGE
VYMEKQAFTALNARLMEEGRAKADAAGEMFDPAKIRQFVTPRNSAAGSLRQKDANVTAQR
PLRFLAWGWGAASELPHDTQFAMMRQIAEWGFPVSPLLARFEDPAALLQHYAAIGERRAG
LPYEIDGVVYKVDRLDYQQRLGFVAKAPRWGIARKFPAERAETVLEKIDIQVGRTGKLTP
VGRLSGVVVGGVTVFNVTLHNRDEIARLGLREGDRIVIQRAGDVIPQVVDNLTRDEDRPA
YHFPDHCPECGSEAVAEEGEVDVRCTGGLICHAQQFERLRHFVSRGALDIDGLGEKSILE
FMELGWLEKGPADLFRLRRHRGDLIGREGWQDKSVDNLLASIEAKRRPDAARLLFGLGIR
HVGAVTARDLLKRFTTLPALREAAEKARAGDEEALGELRSIEGVGPVVVEALGDFFHEHH
NVEVWDDLLSEVSPPDYIVETTASAVSGKTVVFTGKLETMSRDEAKAQAERLGARAAGSV
SPKTDLVVAGPGAGSKMKKAAELGIEVIDEAAWAEIVKAAG
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atggctgacctcaccgaagccgaagccgccaaccagctgatgcggctggcgaaggagatt
gcgcggcataatgcgctctatcacgcgcaggacgagcccgagatcaccgaccaggagttc
gatgcgctggttcggcggaacagcgaacttgaggcgcagtttccgcagctgatacgggcg
gacagtccgtcgaagcaggtcggcgccgccgcatcatcctcggcgctcaccaaggtgccg
cacgaagtccgcatgttcagcctcgacaatgcgttcagcgacgaggacatgagcgacttc
ttcgcgcgcgtccggcggttcctgaacctgccggagggcgagacggtcgcctataccgcc
gaggacaagatcgacggcctgtcctgctcgctgcgctatgaggatggagtgctggtgcgc
gcggcgacacgcggcgacgggctggtcggtgaggatgtcaccgccaatgtccgccacatc
gccgacattcccgaaatgctgcacggagacgccccggcagtgttcgaagtgcgcggcgaa
gtctacatggaaaaacaggcatttaccgcgctcaatgcgcgcctgatggaagaggggcgg
gcgaaggcggacgcggcgggcgagatgttcgatccggccaagattcgccagttcgttacc
ccgcgaaattcggccgccgggtcgttgcggcagaaggacgcgaacgtcaccgcccagcgc
ccgctgcgcttcctcgcctggggctggggcgcggcgagtgagctgccgcatgacacgcaa
ttcgcgatgatgcggcagatcgccgagtggggtttcccggtctcgccgctgcttgcgcgg
ttcgaggaccctgcagcattgctgcagcattatgcggcgatcggcgaacgccgcgcgggc
ctgccgtatgaaatcgacggggtggtctataaggtcgaccggctcgactaccagcagcgg
ctcggcttcgttgcgaaggcgccgcgctgggggatcgcgcgcaagttcccggccgagcgc
gccgagacggtgctggaaaagatcgacatccaggtcggccgcaccggcaagcttacgccg
gtcggacggctgtcgggcgtggtggtcggcggggtcaccgtgttcaacgtcacgctgcac
aaccgcgacgagatcgcccggctcggcttgcgcgaaggcgaccggatcgtgatccagcgc
gccggcgacgtgatcccgcaggtggtcgacaacctcacccgcgacgaggatcgccctgcc
taccatttccccgaccactgccccgaatgcggcagcgaggcggtggccgaggagggcgag
gtcgatgtccgctgcaccggcgggctgatctgccacgcgcagcaattcgaacgcctgcgc
cacttcgtcagccgcggcgcgctcgatatcgacgggctcggcgagaagagcatcctcgaa
ttcatggagcttggttggttggagaaaggcccggccgatctgttccgcctgcgccgccat
cgcggcgatctgatcggtcgggagggctggcaggacaagtctgtggacaatctgttggca
agcatcgaggccaagcgccgccccgacgcagcgcggttgctgttcgggcttggtatccgc
catgtcggtgcggtcacggcgcgcgacctgctcaagcgcttcacgacgctcccggccctg
cgcgaggcggcggagaaggcgcgcgcgggcgacgaggaagcgcttggcgagttgcgctcg
atcgaaggcgtcggcccggtggtggtggaggcgctgggcgacttcttccatgagcaccac
aatgtcgaagtgtgggacgatctgctgagcgaagtctccccacccgattacatcgtcgag
accaccgccagcgcggtttcgggcaagaccgtggtgttcaccggcaagctcgaaaccatg
agccgcgacgaggccaaggcgcaggccgaacggctcggtgcgcgggcggcgggttcggtt
tcgccgaagaccgatctggtggtcgccgggccgggcgctgggtcgaagatgaagaaggcg
gcggaactcgggatcgaggtgatcgacgaggccgcttgggccgagatagtgaaagcggcg
gggtag
DBGET
integrated database retrieval system
