Aphelocoma coerulescens (scrub jay): 138099161
Help
Entry
138099161 CDS
T10543
Symbol
BRCA1
Name
(RefSeq) breast cancer type 1 susceptibility protein isoform X1
KO
K10605
breast cancer type 1 susceptibility protein [EC:
2.3.2.27
]
Organism
acoe Aphelocoma coerulescens (scrub jay)
Pathway
acoe03440
Homologous recombination
acoe03460
Fanconi anemia pathway
acoe04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
138099161 (BRCA1)
09124 Replication and repair
03440 Homologous recombination
138099161 (BRCA1)
03460 Fanconi anemia pathway
138099161 (BRCA1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
acoe01009
]
138099161 (BRCA1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
acoe04121
]
138099161 (BRCA1)
03036 Chromosome and associated proteins [BR:
acoe03036
]
138099161 (BRCA1)
03400 DNA repair and recombination proteins [BR:
acoe03400
]
138099161 (BRCA1)
Enzymes [BR:
acoe01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
138099161 (BRCA1)
Protein phosphatases and associated proteins [BR:
acoe01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
138099161 (BRCA1)
Ubiquitin system [BR:
acoe04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
138099161 (BRCA1)
Multi subunit type E3
BRCC complex
138099161 (BRCA1)
Chromosome and associated proteins [BR:
acoe03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
138099161 (BRCA1)
DNA repair and recombination proteins [BR:
acoe03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
138099161 (BRCA1)
BRCA1-A complex
138099161 (BRCA1)
BRCA1-B complex
138099161 (BRCA1)
BRCA1-C complex
138099161 (BRCA1)
BRCA complex
138099161 (BRCA1)
FA (Fanconi anemia) pathway
Downstream FA components
138099161 (BRCA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT_assoc
BRCT
zf-C3HC4
BRCT_2
zf-C3HC4_4
zf-C3HC4_2
zf-RING_UBOX
RING_XB3-XBAT31
zf-RING_2
zf-C3HC4_3
zf-RING_6
zf-Nse
zf-RING_5
BRCT_3
zf-RING_10
RTT107_BRCT_5
Pepco
Zf_2nd_IFT121
zf-ANAPC11
zf-MIZ
Prok-RING_4
zf-RING_4
Motif
Other DBs
NCBI-GeneID:
138099161
NCBI-ProteinID:
XP_068852344
LinkDB
All DBs
Position
27:complement(3439593..3459381)
Genome browser
AA seq
1802 aa
AA seq
DB search
MDFSVITVGHVQNVLSAMQKNLECPICLDVVQEPVSTKCDHIFCRFCMFKLISKKKKGVA
ECPLCKTEVTKRSLKENSRFKQLIEGLLETIRAFELDTGVKFLKSHHFPKTSTEATAPES
LCKESSVIQSKGFRNRRKSAKGNGQENCTLGASVNIQLTETKMYRPRNKPQKCDSSKGIY
MEFGSESSEEFFKQASKTGFEDKAADQISSQERLEELESAEKRNENSCNAQPDKLCAKEI
TLPNIIGESGFSKEGLSEKSTQSITECAKPDQVNVTECQSSALSVLPVDLLPEQRDRIGA
ASPTVSRDTSFFKNSEEMGEKQTQCSSKNQEFDSEDSSEGRLDKNREMDTDVQNVEAVEA
CEPENDSENDKELPLEKLHQPETLHSATLNKVSKKRLKRSIQKVNEWFSKSNEILSSSSS
LDESAVSADVSGEGDLCLSDKESCISEKTDPMVDSMEIAAVEGNKRWSKQTADDIKDKIF
GKTYKRERKSNPPSALKDILPTTRKEDVAADKCLNNFSKNRLKRKRKTACVLQPEDFIKK
KDTEEADGGPQSVNCCLGDAEKKRCDESVAVNESHLSQNRANNTLTELEEAGGSTWKKAT
EEVTGKHCDGELEMYNCDQKSTRKRSSAAKRCRHSSRTMCALQLVVDRSSVFPDPAEPQI
DSYPSSGEPRKVDSEQKQVRRSRRLQLLTEEMTKETRKGVKGARKSNSDHGRSVPGGQRN
VGTDSAECKDLCEPQDMLSYKPATNLKGGDLEANEVQVSLKNLSDTAETGKSLFSPSCQP
SNCGPTAPHTSSQDREIQGSPLLLQPPSVTAVQTACHQTEEMTESRTAFPQECGQDSQSV
PGDFKTDKLPMAKNVLELTKEAEDSELDTQYLRNIFRHSKRSSFSLFQTPRQARAVEGPA
SETLSCAAQGENKHSKQLQPESLQEEKTAAQSLSRVSEQEELKTCESTHVDHVSSLVVST
GEHRKDISQAAGEGTLAAVMRTGAAQTEDKTRLLQEEQGHEKPVSTEIGIERELRQNSIK
SNRSQSDQSNTEKHDSKEMDLNIGREIGFSSESNQAGRTEVDCKGPTLHFQSKAMICPAT
CQQSPAEFSCVVTRTKSSKRERKCVKGNEEQAAQTVSTAMPECLAAEALEEPLRGNSDLT
GLSETPDGLLCSDIEENTSLCEADRKEQSAVFVKSDNALGKELHNRNASSKPRSRGIHKS
RRRVQKLPSSDEESCEDEDLPCFQTLIFSKSASTPLQSDKQMTSVVESPVSPNTLPHGVS
NDDNIVQKVPEAAQSNVCVSPSQESECSVNLFSSQSNMSEESVNGAQELKKHLPEAHVSK
QMSSVNDSKDTFQNCDGGLKRTEDECQEDPDMGANLGEASGYDSEISIVEDSCGPLSQGE
ILTTQQKNAMQNSLKKLQQEMAVLEAVLKQHGSQNCEALPVHRELPHAGTEGTFEMDQMR
EGKRSPELLLPSSKSSLTQRLDLGKGLECDSVLNNESPSEKTKPVQEAVQEYRQCQLEAE
NAEGQKSGTRQNSTSVSLDLFGNVTQSPDNSSSSVGLCTPQTAEATDGPVVPQNTDKSCG
PGHKLKQSVCFPAPVLDNATGKENATSPVVTKRKEMSIVASGLNHSELLVVQKFVKKTQS
TLSNHITEGTTHVIMKTDEELVCERTLKYFLGIAGGKWVVSYQWIIQSFKERRILDEENF
EVRGDVINGRNHQGPKRARQALTEKIFKDFEICCYGPFTDMTTEHLEWMVELCGASVVKQ
PDLFSHTANSTAVVVVQPDAWKENTDYRAMHQQNNVAVVTREWVLDSVACYECQEFSAYL
MS
NT seq
5409 nt
NT seq
+upstream
nt +downstream
nt
atggacttctcagtgatcactgttgggcacgtacaaaatgtgctttcagctatgcagaag
aacttggagtgcccaatatgtttggacgtggtccaagaacctgtttcaacaaaatgtgat
cacatattctgcaggttctgcatgttcaaacttatcagtaaaaagaaaaaaggtgtggca
gagtgtcctctgtgtaagactgaagttaccaagagaagtctgaaagaaaattccagattt
aagcaactaattgaaggattattggagactatccgtgcttttgagcttgacactggagtg
aagtttttaaagagtcatcactttcctaaaacatccacggaagccactgctcctgagtcc
ctgtgtaaggaaagttctgtcatccaaagtaagggcttcagaaacaggagaaaaagtgct
aaagggaatggacaagaaaactgcaccttgggagctagtgtgaatattcagcttacagag
accaaaatgtatcgtccaagaaacaaaccccagaaatgtgactcttcaaagggtatttat
atggagtttggctctgaatcatctgaagaattttttaaacaggcaagcaaaactgggttt
gaagacaaagcagcagatcagatttcttctcaagaaaggctagaagaacttgagagtgct
gagaagaggaatgaaaattcttgcaatgcacagcctgacaagctgtgtgctaaagaaata
acattaccaaatatcataggtgaaagtggtttctcaaaggaaggcttgagcgagaaaagc
actcagagcatcactgaatgtgccaaacctgaccaagtgaatgtgactgaatgccagagt
tctgctttaagtgttcttcctgtagacctactcccagagcagcgtgacagaattggtgct
gccagtcccacagtgagcagggacacatcattctttaagaactcagaagaaatgggtgaa
aagcaaacccagtgcagcagtaaaaaccaagagtttgattcagaagatagctcagagggc
aggctggataaaaacagggaaatggatactgatgtacaaaatgtggaagctgtagaggca
tgtgaacctgagaatgactcagagaatgacaaagagcttcctctggagaagctacatcag
ccagagacacttcactctgccaccctgaataaagtctccaagaagagactgaagcggagc
attcagaaagtcaatgaatggttttcaaaaagcaatgagattttgtcttccagttcttcc
ctggatgaatctgctgtatcagctgatgtttcaggtgaaggagatctgtgtttatcagat
aaagagtcctgtatttcagaaaagactgaccctatggtagattccatggaaattgcagca
gttgaaggaaacaagaggtggtcaaaacaaacagcagatgacatcaaagacaaaatattt
ggaaaaacatacaagagagagaggaaatcaaatcccccttctgccttaaaagacatttta
cctactacaagaaaggaagatgtggctgctgataagtgcctgaataatttcagcaaaaac
agactcaaacgaaaaaggaagactgcctgtgtcctgcaacctgaggatttcatcaagaaa
aaagatacagaagaggcagatgggggccctcaaagtgttaactgctgccttggagatgct
gaaaagaaaagatgtgatgaaagtgttgctgttaatgagagtcacctttctcagaataga
gcaaataatacactaacagaacttgaggaagcaggaggatccacatggaagaaagctact
gaggaggtcactggcaagcactgtgatggggaactagaaatgtataactgtgatcagaaa
agcaccagaaaacgaagttctgcagcaaaaagatgcaggcattctagtagaactatgtgt
gctctacagttagtagtggatagaagctctgttttccctgatccagctgagccacagatc
gatagctatccaagcagtggagagcccaggaaagtcgattctgagcaaaagcaagtcaga
cgcagcagaaggcttcagttacttactgaggaaatgacaaaggaaacaagaaaaggagta
aagggagcaagaaagagtaacagtgatcatggaaggtctgtccctggaggccaaaggaat
gtgggaactgactctgctgaatgcaaagacctgtgtgagcctcaagatatgctgagttac
aagccagccactaatttgaagggaggtgatctggaagcaaatgaagtgcaggttagtcta
aagaatttatctgacactgcagaaactggaaaaagtctgttcagtccttcatgtcagcct
tcaaactgtggtcctactgcacctcatacaagttctcaagacagggaaatacaaggtagc
cctctcctcctgcaacctccttcagtgactgctgtgcaaactgcttgtcaccagactgaa
gagatgactgaatcacgtactgcctttccccaggagtgtgggcaggattcacaaagtgtt
ccaggagacttcaaaactgacaagttgccaatggctaaaaatgttttggagttgactaag
gaagctgaagacagtgaattagacacgcagtatctgcgaaatatatttaggcattcaaag
cgctcatcctttagcctttttcagactcccaggcaggcacgtgcagtggaaggtcctgct
tctgaaactttatcgtgtgctgctcagggagaaaataaacatagcaaacaattacaacca
gaaagcttgcaagaagagaaaacagctgctcaaagcttgagcagggtttctgagcaagag
gagcttaagacctgtgagtctacccatgttgatcatgtgtcttccttagttgtcagcaca
ggagagcacaggaaggatatttcacaggctgcaggggaagggactctggcagcagtgatg
agaacaggggctgctcagactgaggacaaaaccagattgctacaagaagagcagggccat
gaaaagccagtgtcaactgagatagggatagaaagggagttgagacagaattccatcaaa
agtaatagaagccaaagtgatcagagtaacacagagaagcatgattccaaagaaatggat
ttaaacataggccgggaaataggcttcagttcagaaagcaatcaagcaggaaggactgaa
gttgattgcaaaggaccaactctgcattttcaatccaaagcaatgatttgtcctgcaact
tgtcagcaaagccctgctgaattcagctgtgtagtcactaggacaaaaagtagcaaaaga
gaaagaaaatgtgtaaaggggaatgaagaacaagcagcccaaactgttagcacagcaatg
cctgagtgtttagctgcagaggctctagaagaacctcttagagggaacagtgatcttaca
ggtttgtctgaaactcctgatggcttgctgtgctctgatattgaagagaacaccagctta
tgtgaagctgataggaaagagcaatctgcagtgttcgtaaaaagtgacaatgccctggga
aaagaactgcacaacagaaatgcaagttctaagccaagatctcgaggcattcacaagtct
cgaaggcgtgtgcagaaactgccatcttcagatgaagagtcctgtgaggatgaagactta
ccatgctttcagacattaatcttcagcaaatcagcaagcacacctttgcagagtgataaa
caaatgacatctgtggtagagtctccagtgagtcccaacacgttgcctcacggtgtgagt
aatgatgacaatattgtgcagaaagtgcctgaagctgcccaaagtaacgtgtgtgtttca
ccaagccaggagtcagaatgctctgtcaacttattttcttcccagtccaacatgtctgaa
gaatcagttaatggagcacaagagctgaagaagcatttaccagaagctcatgtatccaaa
caaatgagcagtgtgaatgacagtaaagacactttccaaaattgtgatggagggctgaag
agaactgaagatgaatgccaagaagacccagacatgggagcaaacctaggtgaagcatct
ggatacgacagcgaaataagtattgtagaagattcatgtggaccactctctcagggtgaa
atcctcactacacagcaaaagaatgctatgcaaaatagcctgaaaaaacttcagcaggaa
atggctgtgcttgaagcagtgctaaagcagcatggaagtcagaactgtgaagctttacct
gtccatagggaattgccacatgctggtactgaaggaacatttgaaatggatcaaatgaga
gaaggaaaaaggtctccagaattgttgcttccatcttctaaatcatctttaacacagaga
ttagatctggggaaaggccttgagtgtgacagtgttctaaacaatgaaagtccctctgaa
aagacaaaacctgtgcaggaagcagtgcaagaatacaggcagtgtcagcttgaagcagaa
aatgcagaggggcagaaatctgggaccaggcaaaacagcacatctgtctcgttggatctt
tttggaaatgtgacccagagtccagataactcttcctcttctgttgggctttgtacccct
caaactgcagaagccacagatggccctgtcgtacctcagaacactgataaaagctgtggc
ccaggacacaaattgaagcaaagtgtttgttttcctgcacctgttctcgacaatgcaact
gggaaagaaaatgctacaagtccagttgtgactaagaggaaagaaatgtcaattgtggca
tcaggtctgaatcacagcgagcttttggtggtccagaagtttgtgaaaaaaactcagagc
actttatctaatcacattaccgaaggaacaacccatgtcataatgaaaacagatgaggag
ctggtgtgtgaacggacactgaagtacttcctgggcattgcaggaggaaaatgggtagtt
agttatcagtggataattcagtcttttaaagaaagaaggatactggatgaggagaacttt
gaagttcgaggagatgtaattaatgggcggaaccaccaaggccccaagagggccagacag
gctctgactgaaaagatctttaaagactttgagatctgttgctatggacctttcactgat
atgactacagaacatctggagtggatggtggagctgtgtggtgcctctgtggtgaagcag
cctgatctgttctcacacacagcaaattctactgctgttgtggttgtgcagccagatgct
tggaaggaaaacacggattatagagcaatgcaccagcagaacaacgttgccgtggtaact
cgggaatgggtcttggacagtgtggcttgctatgagtgccaggagttcagtgcttacctc
atgtcctaa
DBGET
integrated database retrieval system
