KEGG   Aphelocoma coerulescens (scrub jay): 138101912
Entry
138101912         CDS       T10543                                 
Name
(RefSeq) LOW QUALITY PROTEIN: SLA class II histocompatibility antigen, DQ haplotype C beta chain-like
  KO
K06752  MHC class II antigen
Organism
acoe  Aphelocoma coerulescens (scrub jay)
Pathway
acoe04145  Phagosome
acoe04514  Cell adhesion molecules
acoe04672  Intestinal immune network for IgA production
acoe05164  Influenza A
acoe05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:acoe00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04514 Cell adhesion molecules
    138101912
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    138101912
 09150 Organismal Systems
  09151 Immune system
   04672 Intestinal immune network for IgA production
    138101912
 09160 Human Diseases
  09172 Infectious disease: viral
   05164 Influenza A
    138101912
   05168 Herpes simplex virus 1 infection
    138101912
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:acoe04147]
    138101912
Exosome [BR:acoe04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   138101912
  Exosomal proteins of epithelial cells
   138101912
  Exosomal proteins of breast milk
   138101912
SSDB
Motif
Pfam: MHC_II_beta
Other DBs
NCBI-GeneID: 138101912
NCBI-ProteinID: XP_068855763
LinkDB
Position
Unknown
AA seq 253 aa
MWGSPVYGTSLLEEGVPPYCSPSPQAAFSRAEKVLSLALAMGRVVAAGAVLVALVVLGAP
PAAGVELLGVFQGMMKSECRFIKGTERVRLVQRSIXQREQQLHXASDVGLFVGDSPCGEK
QAQCWNSHPARLGYKRALADRLCRHHRDIVAPLLAARRASPELSQSILVSPSLSQSLPVP
PRVSIPALRGADAPQPIRARLSDDSSVARQTRSAECPVLDSASHKILTGIGDFVLGFIFL
ALGLGFHLLEKSS
NT seq 762 nt   +upstreamnt  +downstreamnt
atgtgggggtcccccgtttacgggacatccctgctggaggagggtgtccccccttactgc
agccccagccctcaggcagcattcagccgagcagagaaagtgctcagcttggcactggcc
atggggcgagtggtggcagctggggccgtactggtggcactggtggtgctgggagccccc
ccggctgcgggcgtggagctcttgggggtgttccaggggatgatgaagtccgagtgtcgc
ttcattaagggcaccgagcgggtgaggttggtgcagaggagcatctgacagcgggagcag
caactgcacntcgccagcgatgtggggctgtttgtgggggacagcccgtgtggggagaaa
caggcgcagtgctggaacagccatccagccagactggggtacaaacgggctctggcggac
aggctctgccggcaccaccgcgacatcgttgccccgttgctcgcggcccgcagagcttcc
cctgagctctcccagtccatcctagtctctcccagtctctcccagtctctcccagtgccc
ccgcgcgtgtccatcccagccctgcgtggcgctgacgcccctcagccaatcagagcgcgt
ctctctgatgactcatcagttgccaggcagacccgcagcgccgagtgccccgtgctggac
tcggcctcccacaagattctgacagggatcggggacttcgtgttgggcttcatcttcctg
gcgctggggctcggctttcacttgctcgagaagagctcctga

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