Aphelocoma coerulescens (scrub jay): 138106558
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Entry
138106558 CDS
T10543
Symbol
LIG4
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
acoe Aphelocoma coerulescens (scrub jay)
Pathway
acoe03450
Non-homologous end-joining
Brite
Enzymes [BR:
acoe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
138106558 (LIG4)
DNA repair and recombination proteins [BR:
acoe03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
138106558 (LIG4)
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
138106558
NCBI-ProteinID:
XP_068863476
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Position
1:35928307..35932655
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AA seq
912 aa
AA seq
DB search
MASAPVSQPPPKKTVASHVPFADLCSTLERIQKCKSRPEKTKYFKDFLDSWRKFHEALHQ
KEKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLHLPKDGKDAAKLLNYRTP
TGSRGDAGDFAMIAYFVLKPRSPKQGRLTIEQVNEHLDAIANNNAAKNKGQLKKSLLQLI
TQSTALEQKWLIRMIIKDLKLGVSQQTIFSIFHPDAAELHNVTTDLEKVCRQLHDPSVSL
SDVSIMLFSAFKPMLAAIADVQQIEKQMSNQTFYIETKLDGERMQMHKDGDVYKYFSRNG
FDYTQQFGASPLEGSLTPFIHNVFKSNIKNCILDGEMMAYNPETQTFMQKGNKFDIKRMV
EDSDLQTCFCVFDVLMVNDQKLGHEVLSKRYEILSSVFTPVKGRIHVVHKRSARTRKEVI
DALNEAIDNREEGIMVKDPMSVYKPDKRGEGWLKIKPEYVNGLMDELDLLIVGGYWGKGS
RGGMMSHFLCAIAETPPPNEKPTIFHSICRVGSGCTMKELYDLGLKLAKYWKPYHRKDPP
GNILCGTEKPEMYIEPCNSVIVQIKAAEIVDSDMYKTDCTLRFPRIEKIREDKEWYECMT
SDMLEDLRSKAQGKLASKHLHIDEHDEPHEKKRKTVSKVRKIIGIAEQFKAPDLSSVSKV
SNVFEDVEFCVMTGTGKYSKSELESRIAQCGGSVVQNPGPETYCVIAGAENVRVKNIIAS
NKYDVVRAEWLLQCFQTKMLVPWQPAFMIHMSPDTKEHFAREYDCYGDSYTANTDVAQLK
EVFSRMKDSKAVPLHLIAELEERYWWNSCQLGIFRGSTIYVDCYAVVNEPKSKIPGNTLS
IRALELRFYGAKVVSQLKEGVSHVVVGEDHSRVEEMKVLRRTFRKKFKIVSELWVTHSVE
EGVAKNENQYLV
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atggcttctgcacctgtttcgcagcctcctcccaaaaaaactgtggcctctcacgtgcct
tttgccgatctgtgttctactctggagcgaatacagaagtgtaaatctcgtccagagaaa
accaagtatttcaaggattttctggattcctggaggaaattccatgaggcacttcatcaa
aaagagaaggatgtcacagattccttttacccagctatgcgacttattctcccacagttg
gaaagagaaaggatggcatacggaattaaagaaactatgcttgcgaaactctatattgaa
ctgcttcatttaccaaaagatggaaaggacgctgcaaagcttttaaattacagaacacct
acaggctcacgtggagatgctggagattttgcaatgattgcatactttgtgctgaaacct
aggagcccaaaacaaggcagactgacaatagaacaagtcaatgaacacttagatgcaata
gctaataataatgctgctaaaaacaagggtcagttaaagaaaagtcttcttcagttaatt
acccagagcacagcactggaacaaaaatggcttatccgaatgattataaaggatctaaag
cttggtgttagtcaacaaactatattttctattttccatcctgatgctgctgaattgcac
aatgttactactgatttggaaaaagtttgcagacaactgcatgatccgtctgtctcactt
agtgatgtttctatcatgttgttttctgcctttaaaccaatgcttgctgctattgcagat
gtccagcaaattgagaaacaaatgagtaaccagacattctacatagaaactaagctggat
ggtgaacgtatgcagatgcacaaagatggggatgtgtacaagtatttttcccgaaatggg
tttgactatactcagcagtttggtgcttcaccccttgaaggctcattaacgccatttatt
cataatgtatttaagagcaatataaaaaattgcattctcgatggtgaaatgatggcttac
aatcctgagacacaaacctttatgcaaaaaggaaacaaatttgacatcaaaagaatggtg
gaggactctgatctgcagacctgcttctgtgtatttgatgtattgatggttaatgatcag
aagttggggcatgaagtactaagcaaaagatatgaaatattaagtagtgtatttactcca
gtaaagggcaggatacatgttgtccataagagaagtgccagaacaagaaaagaagtaatt
gatgctttaaatgaagcaatagataacagagaggaagggattatggtaaaagatcccatg
tccgtgtacaagcctgacaaacgtggggaaggctggttaaaaatcaagccagaatatgtc
aatggactgatggatgaactggaccttttaattgttggtggttactgggggaaggggtct
cgtggtggaatgatgtctcattttctatgcgctattgccgagacgccccctccaaatgaa
aaaccgaccattttccactccatttgtcgtgttggctctggctgcactatgaaagagttg
tatgatctaggcttgaaactggctaaatactggaagccctaccataggaaggacccccct
ggtaacattttgtgtggaactgaaaaacctgaaatgtacattgaaccttgcaactctgtc
atagttcagatcaaggcagctgagattgttgacagtgatatgtacaaaactgactgtact
ttgagattcccccgaattgagaagataagggaagacaaagaatggtatgagtgcatgact
tcagacatgttagaagacctcagaagcaaagcacaaggaaagctggcatctaagcacctt
catatagatgagcatgatgagccacatgagaaaaaaaggaaaactgtttcaaaggtgagg
aagataattggcatagctgagcaatttaaagctcctgatctttctagtgtaagcaaggtt
tcaaatgtatttgaagatgttgagttttgtgttatgacaggaacgggaaaatactcaaag
tcggagctggaaagcagaatagcccaatgtggtggcagtgtggtgcagaacccagggcca
gagacttactgtgtcattgcaggagctgagaatgtcagagtgaaaaacatcattgcttcc
aacaaatatgatgtggtgagggcagagtggctccttcagtgttttcaaaccaaaatgctg
gtgccttggcaaccagcctttatgattcacatgtctcctgacacaaaagaacattttgct
cgtgagtatgattgttatggagacagttacacagcaaacacagatgttgcacagctcaag
gaagtgttctcaagaatgaaagacagtaaggcagtgcctctgcacttgattgcagagcta
gaagaacgctactggtggaacagttgtcagctcggtatattcagaggaagcactatttat
gtggactgttacgctgttgttaatgagcccaaaagcaaaatccctggaaatacactatca
attagagctttggagctccgtttttatggtgcaaaagtagtttctcagctcaaagagggt
gtctcccatgttgttgtaggagaagatcattcacgggtagaagagatgaaagtgctcagg
agaacatttcggaaaaaatttaaaattgtatctgagctgtgggtaacacactcagtggag
gaaggagtcgcaaagaatgaaaatcagtacttagtttaa
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