Aphelocoma coerulescens (scrub jay): 138112555
Help
Entry
138112555 CDS
T10543
Symbol
SLIT1
Name
(RefSeq) slit homolog 1 protein isoform X1
KO
K06838
slit 1
Organism
acoe Aphelocoma coerulescens (scrub jay)
Brite
KEGG Orthology (KO) [BR:
acoe00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
acoe00536
]
138112555 (SLIT1)
Glycosaminoglycan binding proteins [BR:
acoe00536
]
Heparan sulfate / Heparin
Axon guidance molecules
138112555 (SLIT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
EGF
Laminin_G_2
LRRNT
Laminin_G_1
LRRCT
hEGF
LRR_1
LRR_9
LRR_14
EGF_TEN
EGF_Teneurin
LRR_EndoS
LRRCT_2
EGF_CA
EGF_DL_JAG
EGF_2
EGF_STAB1-2
FNIP
Motif
Other DBs
NCBI-GeneID:
138112555
NCBI-ProteinID:
XP_068875952
LinkDB
All DBs
Position
6:22966314..23027669
Genome browser
AA seq
1538 aa
AA seq
DB search
MAAPTPGGPGGVPAGLRAAAWLLVCAALCRGRAAACPPLCACSGTTVDCHGSALRAVPRS
IPRGTERLELNGNNITRINKNDFAGLKQLRVLQLMENQISMVERGAFDDLKELERLRLNR
NQLHTLPELLFQNNQALSRLDLSENFIQAIPRKAFRGATDLKNLQLDKNQISCIEDGAFR
ALRGLEVLTLNNNNITSIPVSSFNHMPKLRTFRLHSNHLFCDCHLAWLSQWLRQRPTIGL
FTQCAAPAQLRGLNVAEIQKNEFSCSGQTDPAHAQLCSLSSGSCPAMCTCSNGIVDCRGK
GLTAIPANLPETMTEIRLELNGIKSIPPGAFSPYKKLRRIDLSNNQISEIAPDAFQGLRS
LNSLVLYGNKITDLPKGVFGGLFALQLLLLNANKINCVRADAFQDLQNLSLLSLYDNKIQ
SLAKGTFTSLRAIQTLHLAQNPFICDCNLKWLADFLRANPVETSGARCASPRRLANKRIG
QIKSKKFRCSAKEQYFIPGTEDYQLNSECNSDVICPPKCRCESGVVECSNLKLTKIPDRI
PQSTAELRLNNNEISILEATGIFKKLTHLKKINLSNNKVSEIEDGAFEGASSVNELHLTV
NQLESVRSGMFRGLDGLRTLMLRNNRISCIHNDSFTGLRNVRLLSLYDNQISTIAPGAFD
TLQSLSTLNLLANPFNCNCQLAWLGDWLRKRKIVTGNPRCQNPDFLRQIPLQDVAFPDFR
CEEGKEETSCIPRPQCPQECTCLDTVVRCSNKHLKALPKGIPKNVTELYLDGNQFTQVPG
QLSTFKYLQLVDLSNNKISSLSNSSFTNMSQLTTLILSYNSLQCIPPLAFEGLRSLRLLS
LHGNDISSLPEGIFADVTSLSHLAIGANPLYCSCNLRWLSSWVKTGYKEPGIARCAGPPD
MEGKLLLTTPAKKFECQGPPALSVQAKCNPCLSSPCQNQGTCHNDPLGSYRCACPSGYKG
RDCEMALSGCSSNPCANGGTCQPQEGEGAGFRCLCPVGFEGPSCHTTSDPCKEHSCENGG
SCVPSATNYTCLCPAHYTGEFCEQPPNFCSAELNPCQHDSTCISTSQGPRCECAPGYVGS
NCSEDFDDCQDHRCQNNARCLDEVNGYSCLCTEGYSGQLCEMPPHTAGHPGLCERAECQN
GAPCVERGARALCQCLPGFGGPKCEKLLSVNFVDRDTYLQFTDLQDWPRANITLQVSTAE
GNGILLYNGDSDHMAVELYQGHVRVSYDPGTHPSSAIYSAETINDGQFHTVELVTFDQMV
NLSIDGGSPMTMDNSGKHYTLNSEAPLYVGGMPVDVNSAAFRLWQLLNGTSFHGCIRNLY
INNELQDFTKTRMTPGVVPGCEPCRKLYCLHGICQPSGTQGPVCHCEPGWDGPHCDQPRG
GPCQGHKCVHGLCLPLDALSYSCQCHEGYQGALCNQPAEPPDPCRHQPCVHGHCHLTPGG
QPTCECHDGYTGALCDQEPECRGEPVRDYHQVQRGYAICQTTRPVAWVECRGTCGGPDAS
CCTGLRLRRRKYAFECSNGATFVEEVEKPSKCGCSQCL
NT seq
4617 nt
NT seq
+upstream
nt +downstream
nt
atggcggccccgacccccggggggccggggggggtcccggcggggctgcgggccgccgcc
tggctgctggtgtgcgccgcgctgtgccggggccgcgccgccgcctgcccgccgctgtgc
gcctgcagcggcaccacggtggactgccacggctcggccctgcgcgccgtgccccggagc
atcccccgcggcaccgagcgcctggagctcaatggcaacaacataacgcgaatcaacaag
aatgactttgctgggctgaagcagctccgtgtcctgcagctgatggaaaaccagatcagc
atggtggagcgtggggcattcgatgacttgaaggagcttgagcggctgcggctgaaccgc
aaccagctgcacaccctgcccgagcttctcttccagaacaaccaggcgctgtcgcggctg
gacctgagtgagaacttcatccaggccatccccaggaaagcattccgtggggccaccgac
ctcaagaacctgcaactggacaagaaccagatcagctgcattgaagatggggctttccgt
gccctgcgggggctggaggtcttgaccctgaataacaacaatatcacttcaatccctgtg
tccagcttcaaccacatgcccaagctgcgaacgttccgcctgcattccaaccatctcttc
tgcgactgccacctggcctggctctcgcagtggctgcgccagcgccccaccatcgggctc
ttcacccagtgcgccgctcctgcccagcttcgcggcctcaacgtggctgagatccaaaag
aacgagttcagctgctccggacaaacggacccagcacatgcccagctctgcagcttgtcc
tctggctcctgcccagccatgtgcacttgcagcaatggcattgtggactgtcggggcaag
gggctcacggccatccctgccaacctgcccgagaccatgacagagatacgtctggaactc
aacggcatcaagtccatccccccaggagccttctcaccctacaagaagctgcggaggata
gacctgagcaacaaccagatctcggagatcgcccctgatgccttccaggggctgcgctct
ctgaactccctggtgctgtatggcaacaagatcacggacctccccaagggtgtctttgga
ggactttttgccctgcagctgctgcttctcaatgccaacaagatcaactgtgtacgggca
gatgccttccaggacctgcagaacctctcgctgctctcgctctatgacaacaagatccag
agcctggccaaaggcacgttcacctccctgcgggccatccagactctgcacctggcccag
aaccctttcatctgtgactgcaacctgaagtggctggcggatttcctccgtgccaacccc
gtggagaccagcggagcccgctgtgccagcccccggcgcttggccaacaagcgcatcggc
cagatcaagagcaagaaatttcgctgctcggccaaagagcagtacttcatcccagggaca
gaggattaccagctgaacagtgaatgcaacagtgacgtgatttgccccccaaaatgccgc
tgtgaatccggtgtggtcgagtgctccaacctgaaactcaccaagatcccagatcgcatc
ccacagtccacagctgagctacgcctgaacaacaatgaaatctccatcctggaggccact
ggcattttcaagaaactcacacatctgaagaaaatcaacctcagcaacaacaaggtgtca
gaaattgaggatggggcattcgagggggcatcctctgtcaacgagctgcacctcactgtc
aaccagctggagtctgtgcggagcggcatgttcaggggcctggacgggctgaggacacta
atgctgaggaacaaccgcatcagctgcatccacaacgacagcttcacagggctgcgcaac
gtgcgcctgctctccctgtacgacaaccagatcagcacaattgcaccgggtgcctttgac
acgctgcagtccctctccacactgaacctgctcgccaaccccttcaactgcaactgccag
ctggcctggctgggggactggctgcgcaagaggaagatcgtgacagggaaccctcggtgc
caaaaccccgacttcctccggcagatcccactccaggatgttgctttccccgacttcagg
tgtgaggaaggtaaggaggagaccagctgcatcccccggccccagtgcccacaggaatgc
acctgcctcgacacggttgtccgctgcagcaacaagcacctcaaggccctgcccaagggg
atccccaagaatgtcacagagctctacctggatggaaaccagttcactcaggtcccgggg
caactctctaccttcaagtatctgcagcttgtagatctaagcaacaacaagatcagctcc
ctgagcaactcctccttcaccaacatgagccagctcaccaccctgatcctcagctacaac
tccctgcagtgcatccctccgctggccttcgagggcctccgctccctgcggctgctgtct
ctccatggcaatgacatttccagcctccctgagggcatcttcgcagatgtcacctccctg
tcccacctagccatcggggccaaccccctgtactgcagctgcaacctgcgctggctctcc
agctgggtcaagacgggctacaaggagccaggcattgcccggtgcgctgggccccccgac
atggaaggaaagctgctgctcaccacccctgccaagaaatttgagtgccaaggcccaccc
gccctgagcgtccaggccaagtgcaacccctgcctctccagcccctgccagaaccagggc
acctgccacaatgacccccttggctcctaccgctgcgcctgtcccagtggctacaagggc
agggactgcgagatggcactcagtggctgctcctccaacccctgcgccaacgggggaacc
tgccagcctcaggagggggaaggagctgggttcaggtgcctgtgcccagtgggctttgag
ggcccaagctgccacaccaccagcgacccctgcaaggagcacagctgcgagaatgggggc
tcctgtgtgcccagtgccaccaactacacctgcctttgtcctgcccactacacaggggaa
ttctgtgaacagcctcccaatttctgctcagccgagctcaacccctgccaacatgactcc
acctgcatctccaccagccaggggcccaggtgtgagtgtgcacccggctacgtggggagc
aactgcagtgaggacttcgatgactgccaggaccaccggtgccagaacaatgcccgctgc
ctggatgaggtgaacggctactcctgcctctgcaccgagggctacagtggccagctctgc
gagatgccaccccacaccgctggccaccctggcctctgtgagcgagctgagtgccagaac
ggggccccatgtgtggagcggggtgcccgcgccctttgccagtgtctgcctggtttcggc
ggccccaaatgtgagaagctgctgagcgtcaactttgtggaccgtgacacgtacctgcag
ttcactgaccttcaagactggccccgggccaatatcacccttcaggtctccacggctgaa
ggcaatggcatcctgctgtacaacggtgacagtgaccacatggctgtggagctgtaccag
ggccatgtgagggtgagctatgaccctggcacccaccccagctcggccatctacagtgct
gagaccatcaacgacgggcagttccataccgtggagctggtgaccttcgaccagatggtg
aacctgtccattgatggtggcagccccatgaccatggacaactcgggcaagcactacacg
ctgaacagtgaggctcccctctacgtgggaggaatgcctgtggatgtcaactcggctgcc
ttccgcctctggcagctcctcaatggcaccagcttccatggatgcatccgcaacctctac
atcaacaacgagctgcaggacttcaccaagacgcggatgacgccgggggtggtgccgggc
tgcgagccctgccgcaagctctactgcctgcacggcatctgccagccctcgggcacccag
ggccccgtctgccactgcgagcctggctgggatgggccccactgcgaccagccccgcggc
ggtccctgccaggggcacaagtgtgtgcacgggctgtgcctgcccctcgacgccctctcc
tacagctgccagtgccacgagggctaccagggtgcgctctgcaaccagcctgccgaacca
cccgacccctgccgccaccagccctgtgtccatggccactgccacctcaccccaggtggc
cagcccacctgcgagtgccacgatggctacactggagccctctgtgaccaagagccagag
tgccgcggggagccggtgcgggactaccaccaggtgcagcggggctacgccatctgccag
acgacgcggccggtggcctgggtggaatgccgggggacctgtggtggccctgacgccagc
tgctgcactgggctgcggctccggcgcaggaaatatgccttcgagtgcagcaatggtgca
accttcgtggaggaggtggagaagcccagcaagtgtggctgcagccagtgtctgtga
DBGET
integrated database retrieval system
