Adelges cooleyi (spruce gall adelgid): 126845570
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Entry
126845570 CDS
T09500
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
acoo
Adelges cooleyi (spruce gall adelgid)
Pathway
acoo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
acoo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
126845570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acoo03400
]
126845570
Enzymes [BR:
acoo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
126845570
DNA repair and recombination proteins [BR:
acoo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
126845570
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
BRCT
RNA_ligase
BRCT_2
DNA_ligase_IV
mRNA_cap_enzyme
PTCB-BRCT
PHA01746
Peptidase_S24
Motif
Other DBs
NCBI-GeneID:
126845570
NCBI-ProteinID:
XP_050440237
LinkDB
All DBs
Position
Unknown
AA seq
881 aa
AA seq
DB search
METAPGKIQFKLFCRACEDIYKASQHDKKISILQKFIAMCRGSVDKSSDVEIEETFYPIL
RCLLPALDKERGTYGVKEFMLGKMYVKILCLAKDSEDAQKLTNFRIPTNASGSFGDFADT
VFWVVKKRFEEEGTLTLHEVNQHLDDIASKHAAHEPRQVENILQILLVKMSAIQQKWLIR
LLLKDMRLGVAHKKILNVYHQDANDLYDVSNSLKKVCQMLNNPDVRLHEVSINLFDPFAP
MLSQKCDVTDVDKIIKSQSDFFYVDTKLDGERFQLHWDKNQFKYFSRKGNDYTDTFGCNT
SSGVLSPHLTKVFKSNVESCILDGEMMCYNKKLKSFTTKAKNIDVKHLREGNSHRPCFCA
FDVLYLNSQVLTNEPLEKRLEILEKIVVPLDGIFMLTSRNIAKKNEILKYLNDAIDNRDE
GIVVKDPRSIYKPGVRTAGWYKIKPEYTEGALSEFDLLIIGGYYGKGKKRDLISHFLMGL
MENNDGMLKFTSIGRVGSGCKMEELEDLSRTLATHWIKVKPEIMPANINFNKEKPDLWIE
PESSVILQIKATEIVTSNLFKAGTVLRFPRIQKVRYDKPWNHCMTVEEFNAIKVRTDGML
CQDHIMEGQTPNKVRKAQTVASVSKQFRAPDLCDVTTTSEVLEGKEFCVMSDCEHLTKAQ
IERKIHELGGSFVQNPGNNTFCVLANDLKSMRVNAIQKKGEHSIIKTKWMLYCFNDEEFL
NWTPEHVLALSKEHKILMDVEYDTYGDSFTKEATVESLRSAMDKVELNDINVTEESFFKF
QKDLFSEVHCFKAFGKCLVYFDDLNLDTLPTRNFHTNSVLEMIIFKFNGGTVCKEINNDT
THVLVHSSNPKHIKKYESINSQREKPFLIVKENWVKEQIKL
NT seq
2646 nt
NT seq
+upstream
nt +downstream
nt
atggaaaccgcacccgggaaaatacaatttaaattattttgccgggcgtgtgaggatata
tataaagcatcgcaacatgataaaaaaatcagcattctccaaaagtttatcgccatgtgt
agagggtctgttgacaaaagctctgacgttgaaattgaagaaacattttatccaattcta
aggtgtttacttccagcattagacaaggaaagaggaacctatggagttaaagaattcatg
ttaggcaaaatgtatgtcaaaatactctgtctagctaaggacagcgaggatgctcaaaaa
ctcaccaatttcagaattccaactaatgctagcggctcttttggtgattttgccgatacc
gtgttttgggtggttaagaaacggttcgaagaagaaggcacattaactctgcatgaagta
aatcaacacttagacgatattgcatcgaaacacgctgctcatgaaccgagacaagttgaa
aatattttacaaatattgcttgtgaaaatgagtgcaatccaacaaaagtggctaatcaga
ttattactaaaagacatgcgtttaggcgtagcacacaaaaaaatccttaatgtgtaccat
caggacgctaatgatttgtacgatgttagcaacagtctaaaaaaagtttgccagatgttg
aacaatccagatgtacgacttcatgaggtctcaataaatttatttgacccgtttgcaccg
atgttgagccagaaatgtgatgttaccgacgtagacaaaatcataaaatcacaaagtgat
tttttttacgtggacaccaaattggacggtgaacggtttcaattgcactgggacaaaaat
caatttaaatacttcagccgtaagggaaacgattatacagacacgtttggttgtaacacg
tcgagtggcgtactaagtccacatctaacaaaagtgtttaaatctaatgtcgaaagctgt
attttggacggcgagatgatgtgctacaacaaaaaattaaaatcgttcacaactaaagct
aaaaatattgacgtaaaacacttgcgagaaggcaactcccataggccgtgtttttgtgct
tttgatgtcttgtatttaaacagtcaagtattgaccaacgagcctttagagaagcgatta
gaaatccttgagaaaattgttgtaccattggatggaattttcatgttaacttcgagaaat
attgcaaaaaaaaatgaaatattaaagtacttaaacgatgcaattgacaatcgagatgaa
ggcattgttgtaaaagaccctcgatcgatttacaagccaggcgtacgaaccgccggatgg
tataaaataaagccagaatatacagaaggggccttatcagaatttgatctattgatcatc
ggcggttattatggcaaaggaaaaaaaagagatttaattagtcattttctcatgggtcta
atggaaaacaatgacggtatgttgaaatttacttcgattggacgagtgggttcaggatgt
aaaatggaagaattagaagacctatcaagaacattggccacgcattggataaaagtaaaa
cccgaaataatgcctgccaatataaatttcaataaagaaaaacctgatctttggatagaa
ccggaatcgtctgtaatattacagataaaagccacagaaattgttaccagtaatttgttt
aaagctggaaccgtgctgagattccccagaattcaaaaagtacgatatgataagccgtgg
aatcactgtatgaccgtggaggaattcaatgcgattaaagtgcgaacggacggcatgttg
tgccaggatcacatcatggaaggacagacaccaaataaagtgaggaaagctcaaacagtt
gctagcgtgagcaaacagtttcgagcgcctgatttgtgtgacgtaacaacaacgtcggaa
gtgcttgaaggcaaagagttttgcgttatgtctgactgtgagcatttgactaaagctcaa
atagaacggaaaattcacgagcttggtggctctttcgttcaaaatcccggcaacaacacc
ttttgcgtgctcgccaacgacctgaaatcaatgcgggtcaacgctatacaaaaaaaagga
gaacacagtataataaaaacaaaatggatgttgtattgttttaatgatgaggagttcctt
aattggacaccagagcatgtgctggccttgtctaaggagcataaaatactgatggatgta
gagtacgacacttatggcgatagtttcaccaaggaggcaaccgtcgaaagtctacggagt
gcaatggataaagtcgaattgaacgacattaacgtcacggaggagagtttttttaaattt
cagaaagatttattcagtgaagtccattgttttaaagcgtttggcaaatgtttagtatac
tttgacgatttaaacctagatactttaccgaccagaaatttccataccaattcagttctg
gaaatgattatttttaaatttaacggcggtacggtgtgcaaagaaataaataacgatacc
acacacgttctagttcactcgagtaatccgaaacatatcaaaaaatatgaaagtataaat
tctcaaagagaaaaaccttttctaattgtaaaagagaattgggtcaaagaacaaatcaaa
ttatag
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