Aeribacillus composti: RI196_16675
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Entry
RI196_16675 CDS
T09377
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
acop
Aeribacillus composti
Pathway
acop03030
DNA replication
acop03410
Base excision repair
acop03420
Nucleotide excision repair
acop03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
acop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RI196_16675 (ligA)
03410 Base excision repair
RI196_16675 (ligA)
03420 Nucleotide excision repair
RI196_16675 (ligA)
03430 Mismatch repair
RI196_16675 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
acop03032
]
RI196_16675 (ligA)
03400 DNA repair and recombination proteins [BR:
acop03400
]
RI196_16675 (ligA)
Enzymes [BR:
acop01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RI196_16675 (ligA)
DNA replication proteins [BR:
acop03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RI196_16675 (ligA)
DNA repair and recombination proteins [BR:
acop03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RI196_16675 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RI196_16675 (ligA)
MMR (mismatch excision repair)
DNA ligase
RI196_16675 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RI196_16675 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
RNA_pol_A_CTD
BRCT_2
RNA_ligase
HHH_8
Motif
Other DBs
NCBI-ProteinID:
WNF32838
LinkDB
All DBs
Position
complement(3435519..3437522)
Genome browser
AA seq
667 aa
AA seq
DB search
MDKRTAENRVKELHKLLNQYNYEYHVLDNPSVPDAEYDRLMRELIELEEKYPELKTPDSP
SQRVGGAVLDAFRKVAHRVPMLSLANAFNEQDLRDFDRRVRQAVGDVEYVVELKIDGLAV
SLRYENGLFVQGSTRGDGTTGEDITENLKTIRSIPLRLKKNLSMEVRGEAFMPKASFEKL
NEERIAKGEVPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYNIAELGDTGVSSHSEALDL
LDELGFKTNRERRKCKNIDEVIELLDQLLEKRSQLPYDIDGVVIKVDSLRQQEALGATAK
SPRWAIAYKFPAEEVVTKLLDIELAVGRTGVITPTAILEPVKVAGTTVKRASLHNEDLIR
EKDIKLGDFVVVKKAGDIIPEIVNVLVDRRTGNEQDFRMPSHCPECNSELVRLEGEVALR
CINPKCPAQIREGLIHFVSRNAMNIEGLGERVITQLFKEGLIQDVADLYKLTKPQLLQLE
RMGEKSTDNLLHAIERSKENSLERLLFGLGIRYVGEKAAKILAEHFETMERLQSATREQL
INIPEIGEKMADSIATFFEQPEVKELIEELKSFGVNMTYKGPKRTNSDEGDSYFAGKTIV
LTGKLAEMSRNEAKEQIEARGGKVTGSVSKKTDLVIAGEDAGSKLAKARELNIEVWDESR
LLEELRK
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atggacaaacgtacggcagaaaaccgtgtaaaagaattgcacaagcttttgaatcaatat
aattatgaatatcacgttcttgacaatccgtctgttcctgacgcagagtatgaccgcctc
atgagagaactaatagaacttgaagaaaaatatccagagctgaaaacccctgattctccc
tcccagcgggtggggggcgctgttttagatgctttccgaaaagtggcgcaccgcgtgccg
atgctaagtttggcaaatgcttttaatgagcaggacttgcgtgactttgacaggcgagtc
cgccaagcagttggggatgtcgaatatgtagtggagctgaaaattgacgggcttgcggtt
tcccttcgatatgaaaacggcctgtttgtacaaggatcaacacgaggagacggcacgacc
ggggaagatatcacggaaaatttaaaaacgatccgctcgatccctttgagactaaagaaa
aatttatcgatggaagtgcgcggagaagcatttatgccgaaagcatcatttgagaaatta
aatgaggagcgcattgcaaaaggggaagttccgtttgccaatccgagaaacgctgccgct
ggttccttgcgccagctagacccaaaaattgccgcgaaacgaaatttagatattttcgtc
tataacatagcagagcttggcgataccggagtgtcttctcatagtgaagcattggacttg
cttgatgaactcggctttaaaacaaatcgtgaacgcagaaaatgcaaaaacatcgacgaa
gtgatcgagctgcttgatcaattgttggaaaagcgctctcagcttccgtatgatattgac
ggagttgtaattaaggttgatagtttgcgtcagcaggaagcgcttggggcaactgcgaaa
agcccgagatgggcgattgcctataagtttccggcagaagaggtggtgacgaagctgctg
gatattgaactcgctgtcggacgcaccggcgtcattaccccaacagcgatcttagagcct
gtaaaggttgccgggacaaccgtcaaacgagcttcccttcataatgaagatttgattcgg
gaaaaagatattaagcttggggacttcgtcgtcgtgaaaaaagccggggacatcattcct
gaaattgtaaatgttcttgttgacagaagaacaggcaatgaacaggattttcggatgcct
tcgcactgtccagaatgcaatagcgagctggtccggttggaaggagaagttgcgcttaga
tgcattaatccaaaatgtccggcgcaaattcgcgaaggtctcatccattttgtttcccga
aatgcgatgaatattgaaggactaggggagcgcgtcatcacccaattgtttaaagaaggc
ttgattcaagatgtagcggatttatacaaattaacaaaaccccaattgcttcagcttgaa
cggatgggtgaaaaatcaacggataatttgttgcacgcgattgaacggtcgaaggaaaat
tcgctggagcgccttttattcggtttaggcattcgctatgtcggcgaaaaagccgccaag
attttagcagagcattttgaaacaatggagcggctgcaaagcgcgacaagagaacaatta
atcaacataccggaaatcggagaaaaaatggctgattccatcgctactttttttgaacag
cctgaagtaaaagaattgattgaagaattaaagtcgttcggcgtcaatatgacgtataaa
ggtccgaaacggacaaattcagatgaaggggattcgtattttgccggtaagacaatcgtt
ttaacagggaagcttgctgaaatgtcccgcaatgaagcaaaagaacaaattgaagcaaga
ggcggaaaagttactggcagtgtgagcaaaaaaacagatcttgtaatcgctggtgaagat
gccggcagcaagcttgcaaaagctcgcgaattaaacatagaggtttgggatgagtctcgt
ttacttgaagaactaaggaaatag
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