Alistipes communis: A5CBH24_26010
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Entry
A5CBH24_26010 CDS
T06592
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
acou
Alistipes communis
Pathway
acou03030
DNA replication
acou03410
Base excision repair
acou03420
Nucleotide excision repair
acou03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
acou00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
A5CBH24_26010 (ligA)
03410 Base excision repair
A5CBH24_26010 (ligA)
03420 Nucleotide excision repair
A5CBH24_26010 (ligA)
03430 Mismatch repair
A5CBH24_26010 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
acou03032
]
A5CBH24_26010 (ligA)
03400 DNA repair and recombination proteins [BR:
acou03400
]
A5CBH24_26010 (ligA)
Enzymes [BR:
acou01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
A5CBH24_26010 (ligA)
DNA replication proteins [BR:
acou03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
A5CBH24_26010 (ligA)
DNA repair and recombination proteins [BR:
acou03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
A5CBH24_26010 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
A5CBH24_26010 (ligA)
MMR (mismatch excision repair)
DNA ligase
A5CBH24_26010 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
A5CBH24_26010 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
HHH
BRCT_2
Auto_anti-p27
PTCB-BRCT
Zn_ribbon_NUD
Spike_JR2
RNA_lig_T4_1
Motif
Other DBs
NCBI-ProteinID:
BBL05288
UniProt:
A0A4Y1WYV1
LinkDB
All DBs
Position
3216157..3218223
Genome browser
AA seq
688 aa
AA seq
DB search
MGILERIRELRTQLNDHNRKYYVENAPEISDFEFDRLLRELQELEAAHPEYADPNSPTVR
VGSDITSEFRSVRHRFPMLSLGNTYSLDELHEFIERVEKEVGETEFVCELKFDGTAISLT
YDHGRLSQAVTRGDGTAGDDVTANVRTIRSVPLVLSGEGYPDLFEIRGEILMPYASFDRL
NAEREAAGEPLFANPRNAAAGTLKQLSSAVVARRGLDCTLYQLAGDDLPYDSHWENLQKA
REWGFKISNEMRICRSIAQVDEFIAHWDEARSRLPFPTDGVVVKVNRYADRRALGSTAKA
PRWAVAYKFKAEQALTELLSVDFQVGRTGAVTPVANLAPVQLAGTTVKRATLHNAEQIAQ
LDIRLGDRVYVEKGGEIIPKITGVDFAQRKADSRPFEYITVCPVCGTPLVRYEGEAKYYC
PNQNHCEPQILGRIIHFIRRKAMDIDGLGEETVELLYRNGLVHDAADLYDLRAGQITSLP
RMGEKSAENIMESIRRSKLVPFPRVLFALGIRFVGETTAKYLASHFGSMDAVMRATREEL
VEAEEVGPKVADGILDYFADEGNRTLIERLRRAGLKFEAEAPRLRSDALTGKSFVISGKF
STHSRDELKELIELHGGRNLAAVSANVDYIVAGENMGPAKLKKAEKLGIPILTEKEFLAL
IADDEPAAATFAAEEPETPAQPTQGALF
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atgggtatactcgaacgcatacgcgaactgcgcacgcagctcaacgatcataaccgaaaa
tactacgtcgaaaacgcaccggaaatctcggatttcgaattcgaccgcctgctgcgcgag
ttgcaggaactcgaagcggcgcaccccgaatacgccgatcccaactcccccaccgtgcgc
gtgggcagcgacatcacctcggagttccgcagcgtgcggcaccgcttcccgatgctgtcg
ctgggcaatacctattcgctcgacgagttgcacgaattcatcgaacgggtcgaaaaggag
gtgggcgaaacggaattcgtctgcgaactgaaattcgacggtacggccatttcgctcacc
tacgaccacggccgcctgtcgcaggccgtgacacgcggcgacggcaccgcgggcgacgac
gtgacggccaacgtccgcacgatccgcagcgtgccgctggtgttgtcgggcgagggctat
cccgatctgttcgaaatacggggagagatcctgatgccctatgcgtcgttcgaccgtctc
aacgccgagcgcgaagccgccggcgagccgctcttcgccaatccgcgcaacgccgccgca
gggacgctcaaacagctgtcgtcggccgtcgtggcccgccgcggcctggactgcacgctc
taccagctggcgggcgacgacctgccctacgactcgcattgggaaaacctgcaaaaggca
cgcgaatggggattcaaaatctcgaacgaaatgcgcatctgccggagcatcgcgcaggtc
gacgaattcatcgcccattgggacgaagcgcgcagccggctccccttccccacggacggc
gtagtggtgaaggtcaaccggtatgccgaccggcgggcgctgggatcgaccgccaaggcc
ccccgctgggccgtagcctacaagttcaaggccgagcaggcgctcaccgaactgctgagc
gtcgacttccaggtcgggcgcacgggcgccgtcactcccgtggcgaacctcgcccccgtc
caactggccggaacgaccgtcaaacgcgccacgctgcacaacgccgaacagatcgcgcaa
ctcgacatccgtctcggcgacagggtctacgtcgagaagggcggcgagatcatccccaag
atcacgggcgtcgatttcgcacagcgcaaggccgacagccgtcccttcgaatacatcacc
gtctgtccggtctgcggcacgccgctggtgcgttacgagggcgaagcgaagtactattgc
cccaatcagaaccactgcgagccgcagattctcggacgcatcatccacttcatccgccgc
aaggcgatggacatcgacggattgggcgaggagaccgtcgagctgctctaccgcaacggt
ctggtgcacgacgccgccgacctctacgacctgcgggccggacagatcacctctctgccc
cgcatgggcgagaaatcggccgagaacatcatggagagcatccgccgttcgaagctggtg
ccctttccgcgcgtgctcttcgcactgggcatccgtttcgtaggcgaaacgacagccaaa
tacctcgcctcgcatttcgggtcgatggacgccgtgatgcgtgccacgcgcgaagagttg
gtcgaagccgaggaggtggggccgaaagtcgccgacggcattctcgactacttcgccgac
gagggcaaccggacgctgatcgaacggctgcgccgcgccgggctgaaattcgaggccgag
gcgcctcgtctccgctccgacgcgctgacaggcaagagtttcgtcatttcgggcaagttc
tcgacgcacagccgcgacgaattgaaggagttgatcgaactgcacggcgggcgcaacctg
gccgccgtgtcggccaatgtcgactacatcgtggccggtgagaatatgggccccgccaaa
ctgaaaaaggccgagaaactgggcatcccgatcctcacggagaaggagttcctcgcgctg
atcgccgacgacgaacccgcagcggcgaccttcgcggcggaggaacctgaaacgcccgcg
cagccgacgcagggcgcattgttttaa
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