Anaeromyxobacter dehalogenans 2CP-1: A2cp1_0729
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Entry
A2cp1_0729 CDS
T00833
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
acp
Anaeromyxobacter dehalogenans 2CP-1
Pathway
acp03030
DNA replication
acp03410
Base excision repair
acp03420
Nucleotide excision repair
acp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
acp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
A2cp1_0729
03410 Base excision repair
A2cp1_0729
03420 Nucleotide excision repair
A2cp1_0729
03430 Mismatch repair
A2cp1_0729
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
acp03032
]
A2cp1_0729
03400 DNA repair and recombination proteins [BR:
acp03400
]
A2cp1_0729
Enzymes [BR:
acp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
A2cp1_0729
DNA replication proteins [BR:
acp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
A2cp1_0729
DNA repair and recombination proteins [BR:
acp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
A2cp1_0729
NER (nucleotide excision repair)
GGR (global genome repair) factors
A2cp1_0729
MMR (mismatch excision repair)
DNA ligase
A2cp1_0729
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
A2cp1_0729
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
FeoA
5_3_exonuc
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
ACL64084
UniProt:
B8JD56
LinkDB
All DBs
Position
819961..822024
Genome browser
AA seq
687 aa
AA seq
DB search
MKKADASARARELRDRIRAADHAYYVLDQPLLADAEYDRLMHELQALEAEHPELVTADSP
TQRVSGAPSERFERVVHREPMLSLGNVQSDDELHEFDARVRRLLGLPDGEPVGYVVEPKL
DGLAVELVYRDGAFTSGSTRGDGVNGEDVTANLRVVGGLGANRGVPHALEGRPPPRVEVR
GEVLLFKEHFEAMNRQLVRAGEEPFANPRNAAAGTLRQLDWRVTARRPLSFIAYEALLPG
GDPWRTHWEKLEELAAWGFETNAENRRCRGLAEVLAYRDRMAERRFELPYDTDGIVVKVD
DLDWRRRLGAASKFPRWAVAFKYPPQEEATRIRRIWASVGRTGVLTPVVDFDPVRLSGAM
VARATLHNEDEMRRKDILEGDWVLVRRAGEVIPEVVKPLPERRTGAEQPFRFPAECPVCG
ARVVREEGEKVYRCTGAACPAQLVGRLCHFAQRRALDIEGLGEKLAAGLVERGQVKDFAD
LYAVPFEVWQQLFSRPRKEQDAGAARELPEKSAQNMVAALERSRKTTLRRFLFALGIPQV
GEATAATLARHFGDLARVMDADEEALKGVRDVGPETAAEIRAWTQEPQNRRVVERLLAAG
VTPEAEVVEARGPFAGKTVVLTGGLSTMSRDDAKAEIERRGGKVSGSVSRKTYLVVAGED
AGSKLEKARSLGVRIAGEEEFVRLLKE
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaggccgacgcttcggcgcgtgcccgcgagctgcgcgaccggatccgcgcggcg
gaccacgcctactacgtcctcgaccagccgctcctcgccgacgccgagtacgaccggctc
atgcacgagctgcaggcgctcgaggccgagcacccggagctcgtcaccgcggactcgccc
acgcagcgggtctccggcgctccctcggagcgcttcgagcgggtggtgcaccgcgagccc
atgctctcgctcggcaacgtgcagagcgacgacgagctccacgagttcgacgcgcgggtg
cgccgcctgctcgggctgcccgacggagagccggtcggctacgtggtcgagccgaagctc
gacgggctcgcggtggagctggtgtaccgcgacggtgcgttcacgagcggttccacgcga
ggcgacggcgtgaacggcgaggacgtcaccgccaacctgcgcgtggtgggcgggctgggc
gcgaaccgcggcgtgccgcacgcgctcgaggggaggccgccgccgcgggtcgaggtccgc
ggcgaggtgctgctgttcaaggagcacttcgaggcgatgaaccggcagctggtccgcgcc
ggcgaggagccgttcgcgaacccgcgcaacgccgccgccgggacgctgcgccagctcgac
tggcgcgtcaccgcccgccgcccgctctccttcatcgcctacgaggcgctgctgccgggc
ggcgatccgtggcgcacgcactgggagaagctggaggagctcgccgcctggggcttcgag
acgaacgcggagaaccgccgctgccgcggcctcgccgaggtgctcgcctaccgcgatcgc
atggccgagcgccgcttcgagctcccctacgacaccgacggcatcgtggtgaaggtggac
gacctcgactggcggcggcggctcggcgcggcctcgaagttcccgcggtgggccgtcgcc
ttcaagtacccgccgcaggaggaggcgacgaggatccgcaggatctgggcctcggtgggc
cgcaccggcgtgctcacgccggtggtggacttcgaccccgtccgcctctccggcgcgatg
gtcgcgcgcgccacgctgcacaacgaggacgagatgcgccgcaaggacatcctcgagggc
gactgggtgctggtgcggcgcgccggcgaggtgatcccggaggtggtgaagccgctcccc
gagcgccggaccggcgcggagcagccgttccggttcccggccgagtgcccggtgtgcggc
gcgcgcgtggtccgcgaggagggcgagaaggtctaccgctgcacgggcgccgcctgcccg
gcgcagctcgtcggtcggctctgccacttcgcgcagcgccgtgcgctcgacatcgagggg
ctgggcgagaagctcgccgccggcctggtggagcgcgggcaggtgaaggacttcgccgac
ctgtacgcggtgccgttcgaggtgtggcagcagctgttcagccgcccgcgcaaggagcag
gacgcgggggcggcgcgcgagctgccggagaagagcgcgcagaacatggtcgcggcgctg
gagcggtcgcgcaagacgacgctcaggcgcttcctgttcgcgctcgggatcccgcaggtg
ggcgaggcgaccgcggccacgctggcgcgccacttcggcgacctcgcgcgcgtcatggac
gcggacgaggaggcgctgaagggcgtccgcgacgtgggcccggagaccgccgcggagatc
cgcgcctggacgcaggagccgcagaaccggcgggtggtcgagcggctcctcgccgccggg
gtgacgcccgaggccgaggtggtggaggcgcgcggcccgtttgccggcaagacggtggtg
ctcaccggcgggctctcgacgatgtcgcgcgacgacgccaaggcggagatcgagcggcgc
gggggcaaggtgtcgggcagcgtctcgcgcaagacctacctggtggtggccggggaggac
gccggctccaagctggagaaggcgcgatcgctgggcgttcggatcgccggcgaggaggag
ttcgtgcgcctgctgaaggagtga
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