Acidovorax sp. RAC01: BSY15_3408
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Entry
BSY15_3408 CDS
T04481
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
acra
Acidovorax sp. RAC01
Pathway
acra03030
DNA replication
acra03410
Base excision repair
acra03420
Nucleotide excision repair
acra03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
acra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BSY15_3408 (ligA)
03410 Base excision repair
BSY15_3408 (ligA)
03420 Nucleotide excision repair
BSY15_3408 (ligA)
03430 Mismatch repair
BSY15_3408 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
acra03032
]
BSY15_3408 (ligA)
03400 DNA repair and recombination proteins [BR:
acra03400
]
BSY15_3408 (ligA)
Enzymes [BR:
acra01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BSY15_3408 (ligA)
DNA replication proteins [BR:
acra03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BSY15_3408 (ligA)
DNA repair and recombination proteins [BR:
acra03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BSY15_3408 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BSY15_3408 (ligA)
MMR (mismatch excision repair)
DNA ligase
BSY15_3408 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BSY15_3408 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
AOG23922
LinkDB
All DBs
Position
3804157..3806244
Genome browser
AA seq
695 aa
AA seq
DB search
MTDSLDLFSAAAQTSQAQAAIKIKALRDQLHRWAHEYYVQDAPSVPDAEYDRVFRELQAL
EAEHPDLITPDSPTQRVIGAVMEGLAPVRHAVPMLSIHTETDTEATGAQAFDARVRRELG
LGEADPAIEYVAEPKFDGLAMSLRYEYGRLVQAATRGDGEVGEDVTHNIRTIRQIPLTLP
HGVPALLEVRGEVYMRRTDFDALNERQREAGGKTFVNPRNAAAGAVRQLDSGIAAQRPLS
FFAYGLGAITPVAEGGPDFRTHYELLQQLKSWGFPVAAQVSIALGATELVAYHQQVGASR
DALPYDIDGVVYKVNALQLQRDLGFKTREPRWAVAHKYPAQEMATRVEGIDVQVGRTGKI
TPVARLAPVFVGGVTVTNATLHNLFEIRKKGVRVGDLVIVRRAGDVIPEVVGVLPGQRAG
YVKNFRMPTHCPVCGSDVVREKSEANHRCTGGLFCAAQRKEAILHFAARRAMDIEGLGDK
LVDQLVDANVIRTLPDLYRLGLTSLIALERMADKSAQNVLAALEKSKQTTLPRFLFGLGI
RHVGEATAKDLARHFGTLDAIMDASVEQLLAVNDVGPVVAQALHTFFEQPHNREVVEQLR
ACGVNWPEGAPAEKALQVLAGKTVVLTGTLPTLSRDAAREMLEAAGAKVAGSVSKKTSYV
VAGEEAGSKLAKAEELGVPVLDEAGMLALLAGPAA
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacagtttggatcttttttcggctgcagcgcaaaccagtcaagcgcaagctgct
atcaaaataaaagcgcttcgagatcagctgcaccgctgggcgcacgagtactacgtgcag
gacgcaccctcggtccctgatgctgaatacgaccgcgtgttccgtgagctgcaggcgctg
gaggccgagcaccccgacctgatcacacccgattcgcccacgcagcgcgtgattggcgcg
gtgatggaaggcctggccccggtgcgccacgcggtgcccatgctcagcatccacaccgag
accgacaccgaggccacgggcgcgcaggcgtttgatgcgcgggtgcggcgcgagctgggc
ctgggcgaagcagaccccgccatcgaatacgtggccgagcccaagttcgacggtctggcc
atgagcctgcgctacgaatacggccgcctggtgcaggccgccacgcgcggggatggcgag
gtgggcgaggacgtgacgcacaacatccgcaccatccgccagattcctctgaccttgccc
cacggcgtcccggccttgttggaagtgcgcggcgaggtctacatgcgccgtaccgacttt
gacgccctcaacgagcgccagcgcgaagcgggcggcaagacctttgtgaacccgcgcaac
gccgccgcaggtgcggtgcgccaactggattcgggcattgcagcgcagcggccgctgagc
ttttttgcctacgggctgggtgccatcacacccgtggccgagggcgggccagacttccgc
acgcactacgaactgctccagcaactcaagtcatggggttttccggtggcagcgcaggta
tccattgccttgggtgctactgaattggtagcgtaccaccagcaggtgggcgccagccgc
gacgcgctgccctatgacatcgacggtgtggtctacaaggtcaacgcgctccagttgcag
cgcgacctgggtttcaagacccgggagccgcgctgggccgtggcgcacaagtacccggcg
caagagatggctacccgggtcgagggcatcgacgtgcaggtgggccgcaccggcaagatc
acgcccgtggcgcggctggcgcccgtgtttgtgggcggtgtcaccgtcacgaatgccacg
ctgcataacctgttcgagatccgcaagaagggcgtgcgcgtgggcgacctggtgatcgtg
cgccgcgcgggcgacgtgattccggaagtcgtgggcgtcttgccggggcagcgggcgggg
tacgtgaagaacttccgcatgcccacccattgcccggtgtgcggcagcgatgtggtgcgc
gaaaaaagcgaggccaaccaccgctgcacgggcggcctgttctgcgccgcgcagcgcaag
gaggccatcctgcactttgcggcccgccgtgccatggacatcgaaggcctgggcgacaag
ctggtggaccagctggtggacgccaacgtgatccgcacgctgcccgacctgtaccgcctg
ggcctcacgtcgctgattgcgctggagcgcatggccgacaagtcggcccagaacgtgctg
gccgcgctggagaaatccaagcagaccaccctgccgcgctttctgttcggcctgggcatc
cgccatgtgggtgaggccacggccaaggacctggcgcggcacttcggcacgctggacgcg
atcatggacgcgagcgtggagcaactgctggcggtgaacgacgtgggccccgttgtggcg
caggcgctgcatacgttttttgagcagccgcacaaccgcgaggtggtcgagcagctgcgc
gcctgtggagtcaactggcccgaaggcgcgcccgccgaaaaggccctgcaggtgctggcc
ggcaagacggtggtgctgaccggcaccttgcccaccctgagccgcgacgccgcccgcgag
atgctggaggctgctggcgccaaggtggcgggctcggtcagcaagaaaacgagctatgtg
gtggcgggcgaagaggccggcagcaagctggccaaagccgaagagctgggcgtgcccgtg
ctggacgaggcgggcatgctggcgctgctggccgggcccgctgcctga
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