Alysiella crassa: LVJ80_00695
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Entry
LVJ80_00695 CDS
T08264
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
acrs
Alysiella crassa
Pathway
acrs03030
DNA replication
acrs03410
Base excision repair
acrs03420
Nucleotide excision repair
acrs03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
acrs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LVJ80_00695
03410 Base excision repair
LVJ80_00695
03420 Nucleotide excision repair
LVJ80_00695
03430 Mismatch repair
LVJ80_00695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
acrs03032
]
LVJ80_00695
03400 DNA repair and recombination proteins [BR:
acrs03400
]
LVJ80_00695
Enzymes [BR:
acrs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LVJ80_00695
DNA replication proteins [BR:
acrs03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LVJ80_00695
DNA repair and recombination proteins [BR:
acrs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LVJ80_00695
NER (nucleotide excision repair)
GGR (global genome repair) factors
LVJ80_00695
MMR (mismatch excision repair)
DNA ligase
LVJ80_00695
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LVJ80_00695
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
BRCT_2
Nlig-Ia
DUF4796_N
SlpA_N
Motif
Other DBs
NCBI-ProteinID:
UOP07043
LinkDB
All DBs
Position
complement(1773488..1775980)
Genome browser
AA seq
830 aa
AA seq
DB search
MQNKIKQLTEQLNRYAHEYYTLDAPTVPDSEYDQLYRELERLEAEFPQFRLPESPTQRVG
GAILSEFASVAHAVPMLSLNNAFSPQNANGVFDHAETLAFNERVCKDLGVSSTAYTIEPK
FDGLAISLLYQNGVLVQAATRGDGAVGEDVTENVRTIRNIPLKLHGNRIPTMIEVRGEVL
MLKADFIALNERQIAQQQKPFANPRNAAAGSLRQLNSKIAAERKLHFFGYGIARFDGIVA
ENRPKTHAEELLWLAELGFSLPQSQSCHELVPSPCGRGLGRGQNGGDPLPSPLPKGEGAD
CRQPESYDWKVCANIAEVLQFYEQMSTKRPHLPYEIDGMVIKVNDLAQQEKLGFVSRAPR
WAIAHKFPAEEALTVVEDIDVQVGRTGAITPVARLKPVSVGGVVVTNATLHNQDEVARKD
VRVGDTVVVRRAGDVIPEILRVVLEHRPMQTIEISGQGDLFSQPETRTEPQFPAFRLPEN
CPVCASPIVREENEAVARCTGGMVCQAQRSQGLIHFASRKAMDIVGLGDKQIEALVEQNI
LQTFADIYQLDIPKLQKIKDPKSSASKWAENILQGVENSRKPLLSRFLFALGIRHVGEST
AKQLAAAFGDVATVCRAPQPVLACLPDIGGVVAQSIAAYFRQPENMKNLHALLQFVEPQS
QNISVNVRELASPARWIARLPEIKISEKRAQELWDLAGGTVDGLLNDKVLPAEWQTWRQI
PKNHALLREVADFLANLPEWHLPHTENAVSGSLNASISGKTFVLTGTLPTLKRDAAAAMI
EAAGGKVSGSVSKKTDFVVAGAEAGSKLEKAQSLGVAILSEEDLLNLLGN
NT seq
2493 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaataaaatcaagcaattaaccgagcaactcaaccgctacgcccacgaatattac
actttggacgcacccaccgtccccgacagcgaatacgaccaactctaccgcgaattggaa
cgcctagaagccgagtttccgcaattcaggctgcctgaaagccccacccagcgcgtgggc
ggcgcgattttgagcgaatttgccagcgtagcccatgccgtgccgatgttgtcgctgaac
aatgctttttcgccgcaaaatgcaaatggcgtgtttgaccatgcggaaactttggcgttc
aacgagcgcgtttgcaaagatttgggcgtatcatcaacggcttacaccattgagccgaaa
tttgacggtttggcgattagcttactttaccaaaatggcgtgttggttcaggcagccacg
cgcggagacggtgcggtgggcgaagacgttaccgaaaatgtgagaaccatacgcaatatc
ccattgaaattacacggtaatcgcattccaaccatgattgaagtgcgtggcgaagtattg
atgttgaaagccgatttcatcgccctaaacgaacgccaaatcgcgcaacagcaaaaacct
tttgccaatccgcgcaatgcggcagcaggcagcctgcgccagctcaattccaaaattgcg
gcagaacgaaaattgcattttttcggctacggtattgcgcgatttgacggtattgtggca
gaaaatcgccccaaaacccatgcggaagaattgttgtggttggcggaattgggtttcagc
ctgccgcaatctcaatcgtgccacgaactcgtcccctctccctgtgggagagggttaggg
agagggcaaaacggtggagacccgctccccagccctctcccaaagggagagggagcagat
tgcaggcagcctgaaagttacgactggaaagtctgtgccaatatcgccgaagttttgcaa
ttttacgagcaaatgtccaccaaacgcccccatttgccctacgaaattgacggcatggtc
atcaaagtgaacgatttggcgcaacaagaaaagctgggctttgtttcacgcgcaccgcgt
tgggcaatcgcgcacaaattcccagcagaagaagcacttacggtggtggaggacatagac
gtgcaagtggggcgcacgggcgcaatcacgcctgtggcgcggctcaaacccgtgtcggtg
ggcggtgtggtcgtaaccaacgccactttgcacaatcaggacgaagtggcgcgtaaagac
gtgcgcgtgggcgacacggtggtggtgcgccgtgctggggacgtgattcccgaaattttg
cgcgttgtgctggaacatcgccccatgcaaaccattgaaatttcaggacaaggcgatttg
ttcagccagcctgaaacgcgcaccgagccacaatttcccgcattcaggctgcctgaaaac
tgccccgtttgcgccagccccattgtgcgcgaagaaaacgaagcggtggcgcgttgcaca
ggcggcatggtctgccaagcgcagcgcagccaagggctgattcacttcgccagccgcaaa
gcgatggacatcgtgggcttgggcgacaagcaaattgaggctttggtggaacaaaatatt
ttgcaaacatttgccgatatttatcaactggatatcccaaaattgcaaaaaatcaaagac
cccaaatccagcgcaagcaaatgggcagaaaacattttgcaaggcgtggaaaacagccgt
aagcccttgttatcccgatttttattcgccttggggatacgacacgttggcgaaagcacc
gccaaacagcttgccgccgcctttggcgatgtggcgaccgtttgccgtgcgccccagcct
gtgttggcgtgtttgcccgatattgggggcgtggtggcgcagtccattgccgcctatttc
aggcagcctgaaaacatgaaaaacctgcacgcattattgcaatttgttgaaccccaatcg
caaaacatcagcgtgaacgtgcgcgaattggcaagcccagcgcggtggattgcgcggctg
cctgaaatcaaaatcagcgaaaaacgcgcccaagaattgtgggatttggcaggcggcacg
gtggacggtttgctcaacgacaaagtgttgccagccgaatggcaaacttggcgacaaatc
ccgaaaaatcatgccctattgcgcgaagttgccgactttttggcgaatttacccgaatgg
catttgccccatactgaaaatgcggtttcaggcagcctgaacgcatcaatttcaggcaaa
acctttgttttaacaggcactttgcccacgctgaaacgcgatgcagccgccgcaatgatt
gaagcggctggcggcaaagtgtcaggcagcgtgtccaaaaaaaccgattttgtggtggca
ggtgcagaagcaggcagcaaattggaaaaagcgcaaagtttgggtgtggcgattttgtcg
gaagaagatttgttgaatttgttggggaattga
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