KEGG   Aerophototrophica crusticola: HHL28_03270
Entry
HHL28_03270       CDS       T10567                                 
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
acru  Aerophototrophica crusticola
Pathway
acru03030  DNA replication
acru03410  Base excision repair
acru03420  Nucleotide excision repair
acru03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:acru00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    HHL28_03270 (ligA)
   03410 Base excision repair
    HHL28_03270 (ligA)
   03420 Nucleotide excision repair
    HHL28_03270 (ligA)
   03430 Mismatch repair
    HHL28_03270 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:acru03032]
    HHL28_03270 (ligA)
   03400 DNA repair and recombination proteins [BR:acru03400]
    HHL28_03270 (ligA)
Enzymes [BR:acru01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     HHL28_03270 (ligA)
DNA replication proteins [BR:acru03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     HHL28_03270 (ligA)
DNA repair and recombination proteins [BR:acru03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     HHL28_03270 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     HHL28_03270 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     HHL28_03270 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      HHL28_03270 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden OB_DNA_ligase HHH_2 BRCT DNA_ligase_ZBD HHH_5 PTCB-BRCT Nlig-Ia RNA_ligase ESX-1_EspG
Other DBs
NCBI-ProteinID: QJE72250
UniProt: A0A858R4A5
LinkDB
Position
complement(687871..690003)
AA seq 710 aa
MPDLRATPVDTLTLDQAKEEHDALVREVRHHRELYYRKDAPEISDADYDALEKRLNLVEA
RFPELVTADSPTQTVGAAPGTGFRKLRHTVPMLSLDNAFAAEDVDGFIEQIVRFLNLKTV
DGLEFVAEPKIDGASLSIRYEDGELVQAATRGDGTEGEDVTANVRTIAEIPNRLSGPAPK
VLEVRGEVYMTRDSFFELNKRQAEAGEKVFANPRNAAAGSLRQLDARITAKRPLCFFAYT
WGELSEPLAATQWDSLQRLKALGLQVPKQSTLCRSRDELLAYYEQIGKERSSLPFDIDGV
VYKVNDLALQERLGFRTRTPRWATAHKFPAEQARTLLKSITIQVGRTGALTPVAELEPIT
VGGVVVSRATLHNADEIRRKDIRVGDTVIIQRAGDVIPQVVSVIPEARPADSAEFTFPDH
CPECGSQAVREDGGVVSRCTGGLVCPAQAVERLRHFTSRNAFDIEGLGIERIQLFFDQGR
IRTPADIFTLEAREEQRLDRLVTMTGFGKKSVENLFRAIEARRTIGLDRFIFALGIRQVG
EATAKLLARNYRTAENWRDRMLEAAGERAAAPNQPKAELVGDAYADLCRIEQIGMSVADD
IVQFFGEEHNLKALDDLLAQVTVQEFVPPRVTASPVLGKTVVFTGTLTTMGRSEAKAKAE
ALGAKVSGSVSAKTDYLVVGEDAGSKAAKARELGVTTLTEQEWLALIGQS
NT seq 2133 nt   +upstreamnt  +downstreamnt
atgcccgacctgcgcgcgacccccgtggataccctgaccctggaccaggcgaaggaggag
catgacgccctggtgcgggaggtgaggcaccaccgggagctttattaccggaaggacgcg
ccggaaatttccgacgccgactatgacgcgctggagaagcggctgaacctggtggaggcc
cgcttcccggagctggtgaccgccgacagcccgacccagaccgtgggtgccgccccgggc
accggcttcaggaagctgcgccacacggtgcccatgctgtccctggacaacgccttcgcg
gcggaggacgtggacggcttcatcgagcagatcgtccggttcctgaacctgaagaccgtg
gacgggctggagttcgtggcggagccgaagatcgacggcgcctccctgtcgatccgctac
gaggatggggaactggtccaggccgccacccgcggcgacgggacggagggggaggacgtc
accgccaacgtccgcaccatcgcggagatccccaaccgcctgtccggcccggcgcccaag
gtgctggaagtgcgcggtgaggtctacatgacccgcgacagcttcttcgagctgaacaag
cggcaggcggaggcgggggagaaggtcttcgccaacccgcgcaacgcggcggccgggtcc
ttgcgccagttggacgcgcgcatcaccgccaagcggcccctgtgcttcttcgcctatacc
tggggtgagctgtcggaacccctggccgccacccaatgggacagcctgcaacggctgaag
gccctgggcttgcaggtgcccaagcagagcaccctgtgccgcagccgggacgagctgctg
gcctattatgagcagatcggcaaggagcggtcgtccctgcccttcgatatcgatggcgtg
gtgtacaaggtcaacgaccttgccctgcaagagcggctcggcttccgcacccgcaccccg
cgctgggccacggcccacaagttcccggcggaacaggcccgcaccctgctgaaatccatc
accatccaggtgggccgcacgggggccctgacccccgtggcggagctggagcccatcacc
gtgggcggcgtggtggtcagccgcgccaccctgcacaatgccgatgagatcaggcgcaag
gacatccgcgtcggcgacacggtcatcatccagcgcgccggcgacgtgatcccccaggtg
gtttccgtcataccggaggcccgccccgcggacagcgccgagttcaccttccccgaccat
tgcccggaatgcggcagccaggccgtgcgggaggacgggggcgtggtcagccgctgcacc
ggcggcttggtctgccccgcccaggcggtggagcggctgcggcacttcaccagccgcaac
gccttcgacatcgaggggctgggcatcgagcgcatacagcttttcttcgaccagggccgg
atcaggacccccgccgacatcttcaccctggaggcgcgggaggagcagcggctggaccgg
ctggtcaccatgaccggcttcggcaagaaatcggtggagaacctgttccgggccatcgag
gcccgccgcaccatcggcctggaccgcttcatcttcgccctgggcatccggcaggtgggg
gaggccacggccaagctgctggcccgcaactaccgcacggcggagaactggcgcgaccgg
atgctggaggccgcgggcgagcgcgccgccgcccccaaccagcccaaggcggagctggtg
ggcgacgcctatgcagacctctgccggatcgagcagatcggcatgagcgtggccgacgac
atcgtccagttcttcggcgaggaacacaacctgaaggccctggacgacctgctggcccag
gtgacggtgcaggagttcgtgccgccccgggtcacggccagccccgtgctgggcaagacc
gtggtcttcaccggcaccctgaccaccatgggccggtccgaggccaaggccaaggcggag
gccctgggcgccaaggtcagcggctcggtcagtgccaagaccgactatctggtggtgggg
gaggatgcgggcagcaaggccgccaaggcgcgggagctgggcgtcaccaccctgaccgaa
caggaatggctggcgctgatcgggcagagctag

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