Anolis carolinensis (green anole): 100553365
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Entry
100553365 CDS
T01608
Symbol
lsm3
Name
(RefSeq) LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated
KO
K12622
U6 snRNA-associated Sm-like protein LSm3
Organism
acs
Anolis carolinensis (green anole)
Pathway
acs03018
RNA degradation
acs03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
acs00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100553365 (lsm3)
09123 Folding, sorting and degradation
03018 RNA degradation
100553365 (lsm3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acs03019
]
100553365 (lsm3)
03041 Spliceosome [BR:
acs03041
]
100553365 (lsm3)
Messenger RNA biogenesis [BR:
acs03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100553365 (lsm3)
mRNA degradation factors
5'-3' decay
Lsm complex
100553365 (lsm3)
Spliceosome [BR:
acs03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
100553365 (lsm3)
Complex C
U2 snRNP components
100553365 (lsm3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
TIG_SUH
vATP-synt_E
RimP_C
Motif
Other DBs
NCBI-GeneID:
100553365
NCBI-ProteinID:
XP_003217786
Ensembl:
ENSACAG00000013503
LinkDB
All DBs
Position
2:169455637..169460943
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AA seq
102 aa
AA seq
DB search
MADEVDQQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET
VTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLRVG
NT seq
309 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgaagttgatcagcaacaaactactaatacagtagaagaacctttggacctc
atcagacttagtcttgatgaacgaatttatgtgaaaatgagaaatgaccgagaacttcga
ggcagattacatgcgtacgaccagcatttgaatatgattttgggtgatgttgaagaaact
gtgacaactatagagattgatgaggaaacatatgaggagatctacaaatccaccaagagg
aatatcccaatgctgtttgtcagaggagatggagttgtacttgttgctcctccactgagg
gttggctga
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