Actinoplanes sp. L3-i22: L3i22_097160
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Entry
L3i22_097160 CDS
T08939
Symbol
ligA
Name
(GenBank) DNA ligase A
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
actl
Actinoplanes sp. L3-i22
Pathway
actl03030
DNA replication
actl03410
Base excision repair
actl03420
Nucleotide excision repair
actl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
actl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
L3i22_097160 (ligA)
03410 Base excision repair
L3i22_097160 (ligA)
03420 Nucleotide excision repair
L3i22_097160 (ligA)
03430 Mismatch repair
L3i22_097160 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
actl03032
]
L3i22_097160 (ligA)
03400 DNA repair and recombination proteins [BR:
actl03400
]
L3i22_097160 (ligA)
Enzymes [BR:
actl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
L3i22_097160 (ligA)
DNA replication proteins [BR:
actl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
L3i22_097160 (ligA)
DNA repair and recombination proteins [BR:
actl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
L3i22_097160 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
L3i22_097160 (ligA)
MMR (mismatch excision repair)
DNA ligase
L3i22_097160 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
L3i22_097160 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
Nlig-Ia
HHH
BRCT_2
Auto_anti-p27
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
BCY14628
LinkDB
All DBs
Position
complement(10885480..10887675)
Genome browser
AA seq
731 aa
AA seq
DB search
MTSPSSEAGARHAELAEEIRGHQYRYYVLDAPTIADGEFDVLLRELEALETEFPELRTPD
SPTQNVGGTFSTDFVTVPHVERMMSLDNVFSFDELDAWAERTVRDAGGPVPFLCELKVDG
LAINLLYEKGRLIRGLTRGDGRSGDDMTANVRTIREIPERLTGDDVPDLIEVRGEIYFPG
EAFADLNATLVEQGKAPFANPRNAAAGSLRQKDPRITASRGLRMVVHGIGAREGFRPVSQ
SQAYDRLRAWGLPTSTRWKVVDDMAGVREFIGYYGEHRHDVEHEIDGVVVKVDPVAIQGR
LGSTSRAPRWAIAFKYPPEEVTTRLLDIAVNVGRTGRVTPYAIVAKVKVAGSEVSQATLH
NAQEVVRKGVLIGDTVVLRKAGDVIPEILGPVIDLRPADARAFVMPTECPSCGTPLAPAK
EGDIDIRCPNSEACPGQLFQRLATLASRDVLDIEVLGEKSAKALLDSGVLHNEGDLFTLT
EEDLRRVPFFVNKNGQLGTNAGKMLQSLAEARSRPFAKVLVALSIRHVGPTAAEALAVEY
GSMDALEEVLARTAADPVAVAASAEAASIEEAGAEAGTAEVATAKRKAKAVDPLAAVEGV
GPIIADSLREWFTVPWHREIVRKWREAGVRMADERVDTGPRPLDGLSFVVTGTLAGFTRD
KAAEAITTRGGKVSGSVSKKTGFVVVGENPGSKYDKAVALRVPVLDEAGFEVLLAEGAEA
ARAVAEIAPEG
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
gtgacttcaccgagttccgaggccggcgcgcgtcacgctgagctcgcggaggagatccgc
ggccatcagtatcggtattacgtgctcgacgcgccgaccatcgccgacggtgagttcgac
gtgctgctgcgcgagctggaggcgctcgagaccgagttccccgagctgcggaccccggac
tcgccgacgcagaacgtgggcggcacgttctccaccgacttcgtcacggtcccgcacgtc
gagcggatgatgtcgctggacaacgtgttcagcttcgacgagctggacgcctgggccgag
cggacggtgcgggacgccggcgggccggtcccgttcctgtgcgagctgaaggtcgacggg
ctggccatcaacctgctctacgagaagggccggctgatccgcggcctgacccggggggac
gggcgcagcggcgacgacatgacggccaacgtgcggacgatccgggagatcccggaacgg
ctgaccggggacgacgtgcccgacctgatcgaggtgcgcggcgagatctacttccccggc
gaggcgttcgccgacctcaacgcgaccctggtcgagcagggcaaggcgccgttcgcgaac
ccgcggaacgcggcggccggcagcctgcggcagaaggacccgcggatcaccgcgtcccgc
ggcttgcggatggtggtgcacggcatcggcgcgcgggagggtttccgtcccgtgtcgcag
tcgcaggcgtatgaccgtctgcgggcctgggggctgcccaccagcacgcgctggaaggtg
gtcgacgacatggccggggtgcgggagttcatcgggtactacggcgagcaccggcacgac
gtcgagcacgagatcgacggggtcgtggtgaaggtcgacccggtggcgatccaggggcgg
ctcgggtcgaccagccgggcgccgcgctgggcgatcgccttcaagtacccgccggaggag
gtcaccaccaggctcctcgacatcgcggtgaacgtggggcgcaccggccgggtgacgccg
tacgcgatcgtggcgaaggtgaaggtcgccggctccgaggtgtcccaggcgaccctgcac
aacgcgcaggaggtggtccgcaagggcgtgctgatcggcgacaccgtggtgctgcgcaag
gccggcgacgtgatcccggagatcctcgggccggtgatcgacctgcggccggccgatgcg
cgggcgttcgtgatgccgaccgagtgcccgtcctgcggcacgccgctggcgccggccaag
gagggggacatcgacatccggtgccccaacagcgaggcctgcccggggcagctgttccag
cggctggccacgctggcgagccgggacgtgctcgacatcgaggtgctgggcgagaaatcg
gcgaaggcgctgctcgactccggggtgctgcacaacgagggcgacctgttcacgctgacc
gaggaggacctgcggcgggtgccgttcttcgtcaacaagaacgggcagctcggtacgaac
gcggggaagatgctgcagagcctggcggaggcccggtcgcggccgttcgcgaaggtgctc
gtcgccctgtcgatccggcacgtcgggccgaccgcggcggaggcgctggccgtggagtac
gggtcgatggacgcgctggaagaggtgctggcgcggacggcggccgatccggtggcggtg
gcggccagtgcggaggcggcttcgatcgaggaggccggggcggaggccgggaccgctgag
gtggccacggcgaagcggaaggccaaggcggttgatccactcgcggcggtggagggcgtc
gggccgatcatcgcggacagcctgcgggagtggttcaccgtgccgtggcaccgggagatc
gtccgcaagtggcgcgaggccggcgtgcggatggccgacgagcgggtggacaccgggccc
cggccgctggacgggttgagcttcgtggtcaccggcacgctcgccgggttcacccgcgac
aaggcggctgaggcgatcaccacccggggcggcaaggtcagcggctcggtgtcgaagaag
accgggttcgtggtggtcggggagaacccgggcagcaagtacgacaaggcggtcgccctg
cgggtgccggtgctggacgaggccggtttcgaggtgctgctcgccgagggcgcggaggcg
gcccgagccgtggcggagatcgcgccggagggctga
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