Actinoallomurus sp. NBC_01490: OG417_16175
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Entry
OG417_16175 CDS
T09731
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
actq
Actinoallomurus sp. NBC_01490
Pathway
actq03030
DNA replication
actq03410
Base excision repair
actq03420
Nucleotide excision repair
actq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
actq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OG417_16175 (ligA)
03410 Base excision repair
OG417_16175 (ligA)
03420 Nucleotide excision repair
OG417_16175 (ligA)
03430 Mismatch repair
OG417_16175 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
actq03032
]
OG417_16175 (ligA)
03400 DNA repair and recombination proteins [BR:
actq03400
]
OG417_16175 (ligA)
Enzymes [BR:
actq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
OG417_16175 (ligA)
DNA replication proteins [BR:
actq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
OG417_16175 (ligA)
DNA repair and recombination proteins [BR:
actq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
OG417_16175 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OG417_16175 (ligA)
MMR (mismatch excision repair)
DNA ligase
OG417_16175 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
OG417_16175 (ligA)
BRITE hierarchy
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
HHH
zf-TFIIB
Motif
Other DBs
NCBI-ProteinID:
WUV02251
LinkDB
All DBs
Position
3364706..3366868
Genome browser
AA seq
720 aa
AA seq
DB search
MATSVPDEARQRHGELTQELDEANYRYYVLDSPTISDADYDRLMREIRALEDEHPDLVTP
DSPTQKVGAPITTDFETVEHLERMQSLDNAFNTDDLSAWVTRAEKEVGTVASFLCELKID
GLAVNLTYENGRLVRGATRGDGRTGEDITNNIRTIDSVPTQLSGDDVPELLEVRGEVYLP
VEAFEKLNEGLVEAGKAPFANPRNAAAGSLRQKDPRVTARRPLDMIVHGFGTWTGGKQPR
SQSESYELMRGFGLPVGDRYTVVDGLDQVREYIEHYGEHRHEPAYEIDGVVVKVDQLALQ
RRLGSTSRWPRWAIAFKYPPQEVNTRLLDIRVGVGRTGRVTPYGVMEPIKVAGSTVAYAT
LHNADEVRRKGVKIGDMVVLRKAGDVIPEIVGPVVDLRDGTEREFSMPTHCPECGTELRA
QKEGDVDIRCPNARTCPAQLRERLYFVAGRGAFDIEALGYVAATALTQPLEPDDPPVKNE
GDLFHLTVEQLLPIKSVVREQRTGLPKIDPKTGEEKVVTFFATKAGEPKKTVEKLFEELE
KAKEQPLWRVLVALSIRHVGPTAAQALAREFRSMDRIIEASEEELTAVEDVGPTIAASVK
DWFEEEWHREILDKWRRAGVRMEDEGSAGPRPLEGVSVVITGSLEGYSRDSATAAVQNLG
GKVSSSVSKKTGFVVFGDSPGSKYDKAVKLGVPLLDETGFGVLLEKGPDAASEAAVVAEE
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
gtggcgacatccgtacccgacgaggcccggcagcggcacggcgagctgacccaggagctc
gacgaggccaactaccgttactacgtcctcgactcgccgaccatcagcgacgccgactac
gaccgcctgatgcgggagatccgcgcgctggaggacgagcatcccgacctggtcacgccc
gactcgccgacccagaaggtcggggcgccgatcaccaccgacttcgagaccgtcgagcat
ctcgagcggatgcagagcctcgacaacgccttcaacaccgacgacctgagcgcctgggtg
acgcgggcggaaaaggaggtcggcacggtcgcctccttcctgtgcgagctcaagatcgac
gggctggcggtcaacctgacgtacgagaacggccggctggtgcggggtgccacgcggggc
gacggccgcaccggcgaggacatcaccaacaacatccgcaccatcgacagcgtgccgacc
cagctgagcggcgacgacgtgcccgagctgctcgaggtgcgcggcgaggtctacctgccg
gtcgaggcgttcgaaaagctcaacgagggcctggtcgaggcgggcaaggccccgttcgcc
aacccgcgcaacgccgcggccggctcgctgcggcagaaggacccgcgcgtcaccgcgcgg
cgtccgctcgacatgatcgtgcacggcttcggcacgtggaccggcggaaagcagccgcgg
agccagtccgagtcgtacgagctgatgcgcgggttcgggctgccggtgggcgaccgctac
acggtggtcgacgggctcgaccaggtgcgcgagtacatcgagcactacggcgagcaccgg
cacgagcccgcgtacgagatcgacggcgtggtggtcaaggtcgaccagctcgccctccag
cggcggctcgggtccacgagccggtggccgcgctgggcgatcgccttcaagtaccccccg
caggaggtcaacacccggctgctcgacatccgggtcggcgtcggccgcaccgggcgggtg
acgccgtacggcgtgatggagccgatcaaggtggccggctcgaccgtcgcgtacgcgacg
ctgcacaacgccgacgaggtgcggcgcaagggcgtcaagatcggcgacatggtcgtgctg
cgcaaggccggcgacgtcatccccgagatcgtcgggcccgtggtcgacctgcgcgacggc
accgagcgcgagttctcgatgccgacgcactgtcccgagtgcggcaccgagctgcgggcg
cagaaggagggcgacgtcgacatccgctgcccgaacgcccgcacctgccccgcgcagctg
cgcgagcgtctctacttcgtcgccgggcgcggtgccttcgacatcgaggcgctgggctac
gtggccgcgaccgccctcacccagccgctggagcccgacgatcccccggtcaagaacgag
ggcgacctgttccacctgacggtcgagcagctcctgccgatcaagtccgtcgtacgcgag
cagcgcaccggcctgcccaagatcgatccgaagacgggggaggagaaggtcgtcaccttc
ttcgccaccaaggccggcgagccgaagaagacggtggaaaaactcttcgaggagctggag
aaggccaaggagcagccgctgtggcgggtcctggtcgcgctgtcgatccgccacgtcggg
ccgacggcggcgcaggccctggcgcgggagttccggtcgatggaccgcatcatcgaggcc
tccgaggaggagctgacggcggtcgaggacgtcggcccgacgatcgcggcctcggtcaag
gactggttcgaggaggagtggcaccgcgagatcctggacaagtggcgccgggccggggtc
cgcatggaggacgagggcagcgccggaccacggccgctcgagggcgtcagcgtggtgatc
accggctcgctcgagggctacagccgcgactccgccaccgccgccgtgcagaacctcggc
ggcaaggtgtcgagctcggtgtcgaagaagaccgggttcgtggtgttcggcgacagtcca
gggtccaaatacgacaaagcggtcaaactgggtgtgccactcctggatgagacgggcttc
ggcgttctgctcgagaagggtccggatgcggccagcgaggcggcggtcgtggccgaggag
tga
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