Actinokineospora sp. UTMC 2448: Actkin_03491
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Entry
Actkin_03491 CDS
T08397
Symbol
ligA_1
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
actu
Actinokineospora sp. UTMC 2448
Pathway
actu03030
DNA replication
actu03410
Base excision repair
actu03420
Nucleotide excision repair
actu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
actu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Actkin_03491 (ligA_1)
03410 Base excision repair
Actkin_03491 (ligA_1)
03420 Nucleotide excision repair
Actkin_03491 (ligA_1)
03430 Mismatch repair
Actkin_03491 (ligA_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
actu03032
]
Actkin_03491 (ligA_1)
03400 DNA repair and recombination proteins [BR:
actu03400
]
Actkin_03491 (ligA_1)
Enzymes [BR:
actu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Actkin_03491 (ligA_1)
DNA replication proteins [BR:
actu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Actkin_03491 (ligA_1)
DNA repair and recombination proteins [BR:
actu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Actkin_03491 (ligA_1)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Actkin_03491 (ligA_1)
MMR (mismatch excision repair)
DNA ligase
Actkin_03491 (ligA_1)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Actkin_03491 (ligA_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_5
HHH_2
BRCT
DNA_ligase_ZBD
HHH
RNA_ligase
Nlig-Ia
zf_C2H2_ZNF598
Motif
Other DBs
NCBI-ProteinID:
UVS79741
LinkDB
All DBs
Position
3859407..3861464
Genome browser
AA seq
685 aa
AA seq
DB search
MLTSPRAAPLAEGMSVAAGRFCSVDARERIQELADRVVVLRDAYYRGSPLVADAEYDAIE
DELRALIAAHPESAPVPNPLEQVGAPSVLHAPVRHSRPMLSLEKATKPEQVAAFFDRFPG
QPVVVMPKLDGLSLALVYESGRLRQAITRGDGTTGDDVTELVRALVDGLPDRIAPQGRVE
VRGEAMMLRSTFAAYNAAHPDKPLINPRNAAAGTLRAKDPETVAERRLQFLAFELATEDA
AEVDLEAGLLSLGFTVADMRHCADAAAALAVIAEIEARRHDLDYDLDGAVLRLADRGAYA
AAGTRSNSPRGALAYKFAAEEKTTVLLDVVWDVGKTGKIAPVAWLEPVFVGGTTVTRATL
ANQEVIRARGIRIGDTVLVRRAGDVIPFVAGVLDESQRTGAEREIVPPSVCPSCEQALTE
QGNSRELFCTNVACPAQTVRRLIHWASRAAADIEAVGGVWIERLAEAGLLEHPSDFYRLT
TEQLLEFDRIGEVSATRMIDSIDASRGVGLRRALIGLAIPMASEGTAARLCRAGFGSLEE
VADAGEERLVAVEDIGPKVAASLTEHLARLRPEIDRLRALGVSLDVREEDLPPVVATDAP
LKGKTVVVTGSISDPRTGEKIPRPTFQRLCERAGATTAGSVSASTDLLITGADVGAAKLT
KAEKHGVQVVDQGEIWQQLIAAGLA
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atgctcacttcgccccgcgcggcgccgcttgccgaggggatgtcggttgccgccggtagg
ttctgctccgtggacgcacgggaacggattcaggagctggccgatcgggtcgtggttctg
cgcgacgcgtactaccggggatcgccgctggtggccgacgccgagtacgacgcgatcgag
gacgagctgcgcgcgctgatcgcggcgcacccggagtccgcgccggtgccgaacccgctg
gagcaggtcggggcgccgagcgtgctgcacgcgcccgtccggcactcgcggccgatgctc
tcgctggagaaggcgaccaagcccgagcaggtcgcggcgttcttcgaccggttccccggg
cagcccgtcgtggtcatgccgaagctcgacggcctctcgctcgcgctggtctacgagtcg
ggcaggctgcggcaggccatcacccgcggcgacgggaccaccggcgacgacgtcaccgag
ctggtccgcgcgctggtcgacggcctccccgaccggatcgcgccgcagggccgcgtcgag
gtgcgcggcgaggcgatgatgctgcgctcgaccttcgccgcctacaacgcagcccacccg
gacaagccgctgatcaacccgcgcaacgccgccgcgggcacgctgcgcgccaaggacccg
gagaccgtcgccgagcgcaggctgcagttcctcgccttcgagctggccacggaggacgcc
gccgaggtcgacctggaggccgggctgctgtccctcggcttcaccgtcgccgacatgcgc
cactgcgccgacgccgccgcggcgctggcggtgatcgccgagatcgaggcgcgccgccac
gacctggactacgacctcgacggcgccgtgctgcgcctggccgaccggggcgcctacgcc
gccgcgggcaccaggtcgaactccccgcgcggcgcgctggcctacaagttcgccgccgag
gagaagacgaccgtgctgctcgacgtcgtgtgggacgtcggcaagaccggcaagatcgcc
ccggtcgcgtggctggagccggtgttcgtcggcggcacgacggtcacccgcgcgacgctg
gccaaccaggaggtgatccgcgcccgcggcatccgcatcggcgacaccgtgctggtccgg
cgcgcgggcgacgtcatcccgttcgtcgcgggcgtgctcgacgagtcccagcgcacgggg
gccgagcgggagatcgtgccgccgtcggtgtgcccgtcgtgcgagcaggcgctcaccgag
cagggcaacagccgggaactgttctgcaccaacgtcgcctgcccggcgcagaccgtgcgc
aggctcatccactgggcctcgcgcgcggcggccgacatcgaggccgtcggcggcgtgtgg
atcgaacggctcgccgaggcgggcctgctcgaacacccctccgacttctaccggctgacc
accgagcagctgctggagttcgaccgcatcggcgaggtctcggccacccgcatgatcgac
tcgatcgacgccagccgaggcgtcgggctgcgcagggcgctcatcgggctcgccatcccg
atggcgtcggagggcactgccgcgcgcctgtgccgggcgggcttcggctcgctggaggag
gtcgccgacgctggcgaggagcgcctggtcgccgtcgaggacatcgggcccaaggtcgcc
gcgtcgctcaccgagcacctggcccgcctgcgcccggagatcgaccggctgcgcgcgctg
ggcgtctccctcgacgtccgcgaggaggacctgccgccggtcgtcgccaccgacgccccg
ctcaagggcaagacggtggtcgtcaccggctccatcagcgacccgcgcaccggggagaag
atcccccgccccaccttccagcgcctctgcgagcgggcgggcgccaccaccgcgggctcc
gtgtcggccagcaccgacctgctgatcaccggagccgacgtcggcgcggccaagctcacc
aaggccgagaagcacggcgtgcaggtggtcgaccagggcgagatctggcagcagctgatc
gccgcgggcctggcgtga
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