Actinomadura sp. WMMB 499: F7P10_33100
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Entry
F7P10_33100 CDS
T06213
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
actw
Actinomadura sp. WMMB 499
Pathway
actw03030
DNA replication
actw03410
Base excision repair
actw03420
Nucleotide excision repair
actw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
actw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
F7P10_33100 (ligA)
03410 Base excision repair
F7P10_33100 (ligA)
03420 Nucleotide excision repair
F7P10_33100 (ligA)
03430 Mismatch repair
F7P10_33100 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
actw03032
]
F7P10_33100 (ligA)
03400 DNA repair and recombination proteins [BR:
actw03400
]
F7P10_33100 (ligA)
Enzymes [BR:
actw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
F7P10_33100 (ligA)
DNA replication proteins [BR:
actw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
F7P10_33100 (ligA)
DNA repair and recombination proteins [BR:
actw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
F7P10_33100 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
F7P10_33100 (ligA)
MMR (mismatch excision repair)
DNA ligase
F7P10_33100 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
F7P10_33100 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH_5
HHH
Motif
Other DBs
NCBI-ProteinID:
QFG25269
UniProt:
A0A5J6UE81
LinkDB
All DBs
Position
7330476..7332656
Genome browser
AA seq
726 aa
AA seq
DB search
MTTSDGTTGGVPGEARQRHLDLSERIDEGNYRYYVLDQPTLSDAEYDRMMRELRELEERY
PELVTPDSPTQRVGAPITTDFATVAHLERMQSLDNAMDADELLAWDERVVKEVGEVAGYL
CEPKIDGLAIAVTYERGRLTRGVTRGDGRTGEDVTHNIRTIADIPNRLAGEGWPDVLEVR
GEVFLPVEGFQQVNAAQVEAGKDPFANPRNAAAGSLRQKDPRITAKRPLSMLVHGFGAWE
GGTRPESQSGAYELMRGWGLPVSDRYEVVGGMDAVRAYIAEYGENRHGTAYEIDGVVVKV
DQFALQRRLGSTSRAPRWAIAWKYPPEEVNTRLLDIKVGVGRTGRVTPYGVMEPTKVAGS
TVDRATLHNAGEVKRKGVLIGDTVVLRKAGDVIPEIVAPVTALRDGSEREFVMPAECPEC
GTELAYEKEGDADIRCPNARYCPGQLRERVFFVAGRSALDIEALGYVAATALTQPIEPAD
PPVKNEGDLFHLTVEELLPIRSLVLDAKTGTPKTDPETGEPKVVSFFANKEGEPKKTVEI
LFEELEKAKKQPLWRVLVALSIRHVGPSAARDLAREMGSLDAIAHASEEELAAVDGVGPT
IAASIASWFAVDWHREIVDKWRAAGVRTQDEGAAGPRPLQGVTVVITGSLEDYSRDSATE
AVQALGGKVSGSVSKKTGFVVVGDSPGSKYDKAMKLGVPVLEEDGFRVLLADGPEAAKKV
AVRADE
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atgaccacgagcgacggcaccaccggcggggttcccggcgaggcacggcagcggcatctg
gacctgagcgagcggatcgacgagggcaactaccgctactacgtcctcgaccagccgacg
ctgagcgacgccgagtacgaccgcatgatgcgggagctgcgggagctggaggagcggtat
ccggagctggtcacgcccgactcgcccacccagagggtcggcgcgccgatcacgaccgac
ttcgcgaccgtcgcgcatctggagcggatgcagagcctcgataacgcgatggacgccgac
gagctgctcgcgtgggacgagcgcgtcgtgaaggaggtcggcgaggtcgcgggctacctg
tgcgagccgaagatcgacggtctggcgatcgcggtgacctacgagcgcggacggctcacg
cgcggcgtcacccgcggggacgggcgcaccggcgaggacgtcacgcacaacatccggacg
atcgccgacatcccgaaccggctcgcgggggagggctggccggacgtcctggaggtgcgc
ggcgaggtcttcctgccggtcgaggggttccagcaggtcaacgcggcgcaggtggaggcc
ggcaaggacccgttcgccaacccgcgcaacgcggcggcggggtcgctgcggcagaaggac
ccgcggatcaccgccaagcgcccgctcagcatgctcgtgcacgggttcggcgcctgggag
ggcggcacgcggccggagagccagtccggggcctacgagctgatgcgcgggtggggactg
ccggtcagcgaccggtacgaggtcgtcgggggcatggacgccgtccgcgcgtacatcgcc
gagtacggcgagaaccggcacggcaccgcgtacgagatcgacggggtcgtggtgaaggtc
gaccagttcgcgctgcagcggcggctcggatcgacgagccgcgcgccgcgctgggcgatc
gcgtggaagtacccgcccgaggaggtcaacacccggctcctcgacatcaaggtcggcgtg
ggacggaccgggcgcgtcaccccgtacggggtgatggagcccacgaaggtcgccggttcg
accgtcgaccgggccaccctgcacaacgcgggcgaggtcaagcgcaagggcgtcctgatc
ggcgacacggtcgtcctgcgcaaggccggggacgtgatcccggagatcgtcgcgcccgtg
acggccctgcgggacggttcggagcgcgagttcgtcatgcccgcggagtgccccgagtgc
ggcaccgagctggcgtacgagaaggagggcgacgccgacatccgctgcccgaacgcgcgg
tactgcccggggcagctgcgcgagcgggtgttcttcgtggcgggccgcagcgcgctcgac
atcgaggccctcggctacgtcgcggcgaccgcgctgacgcagccgatcgaacccgccgac
ccaccggtcaagaacgagggcgacctgttccacctgaccgtggaggagctcctgccgatc
cggagcctggtcctggacgccaagacgggcacgccgaagaccgacccggagaccggggag
ccgaaggtcgtgtcgttcttcgcgaacaaggagggcgagccgaagaagaccgtcgagatc
ctcttcgaggagctggagaaggcgaagaagcagccgctgtggcgggtgctggtggcgctg
tcgatccggcacgtcgggccgtccgccgcgcgcgacctggcccgcgagatgggctcgctc
gacgcgatcgcgcacgcgtccgaggaggagctggccgcggtcgacggcgtcggcccgacg
atcgcggcgtcgatcgcgtcgtggttcgcggtcgactggcaccgcgagatcgtcgacaag
tggcgcgcggcgggcgtccggacgcaggacgagggcgccgcgggcccgcgccccctgcag
ggcgtcacggtggtgatcaccggttcgctggaggactacagccgcgactcggccaccgag
gcggtgcaggcgctcggcggcaaggtgtcgggatcggtgtcgaagaagaccgggttcgtg
gtcgtcggtgacagtcccgggtcaaagtatgacaaggcgatgaagctcggcgtgccggtc
ctggaggaggacgggttccgggttctgctggccgacgggccggaagcggccaaaaaagtc
gctgtccgtgccgacgagtga
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