Actinomycetospora sp. NBC_00405: OG774_11280
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Entry
OG774_11280 CDS
T09735
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
acty
Actinomycetospora sp. NBC_00405
Pathway
acty03030
DNA replication
acty03410
Base excision repair
acty03420
Nucleotide excision repair
acty03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
acty00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OG774_11280 (ligA)
03410 Base excision repair
OG774_11280 (ligA)
03420 Nucleotide excision repair
OG774_11280 (ligA)
03430 Mismatch repair
OG774_11280 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
acty03032
]
OG774_11280 (ligA)
03400 DNA repair and recombination proteins [BR:
acty03400
]
OG774_11280 (ligA)
Enzymes [BR:
acty01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
OG774_11280 (ligA)
DNA replication proteins [BR:
acty03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
OG774_11280 (ligA)
DNA repair and recombination proteins [BR:
acty03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
OG774_11280 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OG774_11280 (ligA)
MMR (mismatch excision repair)
DNA ligase
OG774_11280 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
OG774_11280 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
HHH
PTCB-BRCT
HHH_8
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
WUI63905
LinkDB
All DBs
Position
complement(2278442..2280640)
Genome browser
AA seq
732 aa
AA seq
DB search
MTSETAPIAPGTGQTHVPAEAAQRHRELSEVVADHQFRYYVLDAPIVTDGEFDELFGELQ
GLEERHPSLVTPASPTQRVGGGFSTDFVAVDHLERMLSLDNAFAPEELREWVLRVQRELD
HPTEELLYLCELKIDGLAVNLLYEDGHLTRALTRGDGRTGEDITLNMRTLADVPTELTGT
DEFPVPELMEVRGEVFFRLADFEELNAGLVAAGKQPFANPRNSAAGSLRQKDPRVTATRP
LRLICHGLGKRRGFTPVRQSQAYDALAAWGLPVSTHTRVLHGVDAVIEHVGYWGEHRHDA
EHEIDGVVVKVDDVSLQRRLGSTSRAPRWAIAYKYPPEQATTTLKGISVNVGRTGRVTPF
AEMEPVLVAGSTVSLATLHNAGEVERKGVLIGDRVIIRKAGDVIPEVLGPVVEARTGDEY
AFVMPTHCPECGTELRQMREGDKDLRCPNARSCPAQLRERLFHVAGRGAFDIEVLGYEAA
TALLDAGVVQDEGDVFRLTEDDLGRVDLFRTKAGNVSANGRKLLTNLETARHRPLWKVLV
GLSIRHVGPTAAQALARHFRSVDAIDAASEEELAAVDGVGPTIAHAVREWFSVDWHREVV
EKWRAAGVELEEEVDESVPRNLEGLSIVVTGSLPTLSRDEAKEAILARGGRAAGSVSKKT
AFVVVGDEPGSKYDKAIAAKVPILDEDGFRVLLEQGPDAAAGVALVTGTDGTDEADGADG
SGEAPAEEDASA
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
gtgaccagcgagaccgcgccgatcgcgcccgggacggggcagacccacgtgcccgcggag
gccgcgcagcgccaccgcgagctgtccgaggtcgtggccgaccaccagttccgctactac
gtcctcgacgccccgatcgtcaccgacggggagttcgacgagctcttcggcgagctgcag
ggtctcgaggagcggcacccgtcgctggtcacgcccgcctcgcccacgcagcgggtgggc
ggtggcttctccacggacttcgtcgcggtggaccacctcgagcggatgctctcgctcgac
aacgccttcgcgcccgaggagctgcgcgagtgggtcctgcgggtgcagcgcgagctcgac
cacccgaccgaggagctgctctacctctgcgagctcaagatcgacggcctggcggtgaac
ctgctctacgaggacgggcacctcacgcgcgcgctcacccggggtgacgggcgcacgggc
gaggacatcacgctcaacatgcgcacgctggccgacgtgcccaccgagctgacgggcacc
gacgagttccccgtgcccgagctgatggaggtgcgcggcgaggtgttcttccgcctcgcg
gacttcgaggagctcaacgccggcctcgtcgcggcgggcaagcagccgttcgccaacccg
cggaactccgcggccggctcgctgcgccagaaggatccacgggtcaccgcgacgcgtccg
ctgcggctgatctgccacggcctgggcaagcggcgcggcttcaccccggtgcgtcagtcg
caggcctacgacgcgctggcggcgtgggggctgccggtgtccacgcacacccgggtgctg
cacggcgtcgacgcggtcatcgagcacgtcgggtactggggcgagcaccgccacgacgcg
gagcacgagatcgacggggtggtcgtcaaggtcgacgacgtctccctgcagcgccggctc
gggtcgacgtcgcgggccccgcgctgggcgatcgcctacaagtacccgccggagcaggcg
acgacgacgctcaagggcatcagcgtcaacgtcgggcgcacggggcgcgtgacgccgttc
gccgagatggagccggtgctcgtcgccgggtcgacggtctcgctggcgacgctgcacaac
gcgggcgaggtcgagcgcaagggcgtcctcatcggcgaccgcgtgatcatccgcaaggcg
ggcgacgtcatccccgaggtcctcggcccggtcgtcgaggcacgcaccggcgacgagtac
gcgttcgtcatgccgacgcactgtcccgagtgcggcaccgagctgcggcagatgcgcgag
ggcgacaaggatctgcgctgccccaacgcccgctcctgccccgcgcagctgcgggagcgg
ctgttccacgtcgccggccgcggcgcgttcgacatcgaggtgctcggctacgaggccgcc
accgcgctgctcgacgccggcgtggtgcaggacgagggcgacgtcttccgcctcaccgag
gacgacctcggccgggtcgacctcttccgcaccaaggccggcaacgtctcggccaacggc
cgcaagctgctgaccaacctcgagacggcccggcaccgcccgctgtggaaggtgctcgtg
ggcctgtcgatccgccacgtcgggcccaccgcggcccaggccctggcgcggcacttccgg
tcggtcgacgccatcgacgccgcgagcgaggaggagctggccgcggtcgacggggtcggc
ccgaccatcgcgcacgcggtgcgcgagtggttctcggtcgactggcaccgcgaggtcgtc
gagaagtggcgcgccgcgggcgtcgagctcgaggaggaggtcgacgagtcggtgccccgc
aacctcgaggggctctcgatcgtcgtcaccggttcgctgcccacgctctcgcgcgacgag
gcgaaggaggcgatcctcgcccggggcgggcgcgcagcggggtcggtgtcgaagaagacg
gcgttcgtggtggtcggcgacgagccgggctcgaagtacgacaaggcgatcgccgccaag
gtgccgatcctcgacgaggacggcttccgcgtgctcctggagcaggggccggacgcggcg
gccggtgtcgcgttggtcacgggaacggacgggacggacgaggctgacggggccgacggg
tcgggcgaggcgccggcggaggaggacgcgagcgcctga
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integrated database retrieval system
